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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : hybD.2
DDBJ      :hybD         hydrogenase expression/formation protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  171/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.56.1
:198 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->132 1cfzA PDBj 2e-22 40.9 %
:RPS:PDB   5->166 1cfzA PDBj 3e-38 33.1 %
:RPS:SCOP  5->160 1cfzA  c.56.1.1 * 5e-43 34.4 %
:HMM:SCOP  4->166 1cfzA_ c.56.1.1 * 9.8e-41 36.6 %
:RPS:PFM   25->138 PF01750 * HycI 7e-27 51.3 %
:HMM:PFM   23->151 PF01750 * HycI 4.2e-38 43.4 129/130  
:BLT:SWISS 1->192 HYAD_ECOLI 4e-84 85.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF65851.1 GT:GENE hybD.2 GT:PRODUCT hydrogenase expression/formation protein GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1936291..1936887 GB:FROM 1936291 GB:TO 1936887 GB:DIRECTION + GB:GENE hybD GB:PRODUCT hydrogenase expression/formation protein GB:NOTE identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140 GB:PROTEIN_ID ACF65851.1 GB:DB_XREF GI:194405632 GB:GENE:GENE hybD LENGTH 198 SQ:AASEQ MNAQRVVVMGLGNLLWADEGFGIRVAERLYARYHWPEEVEIVDGGTQGLNLLGYVEQASHLLLLDAIDYGLAPGSLRTYAGEKIPAYLSAKKMSLHQNSFSEVLALADIRGHLPCHIALVGLQPALLDDYGGSLSEIARSQLPAAEQAALAQLAAWGIVPQANEVARCLNYKCLSMENYEGVRIRQYQTRLEGKRSGE GT:EXON 1|1-198:0| BL:SWS:NREP 1 BL:SWS:REP 1->192|HYAD_ECOLI|4e-84|85.4|192/195| SEG 141->155|qlpaaeqaalaqlaa| BL:PDB:NREP 1 BL:PDB:REP 5->132|1cfzA|2e-22|40.9|127/162| RP:PDB:NREP 1 RP:PDB:REP 5->166|1cfzA|3e-38|33.1|160/162| RP:PFM:NREP 1 RP:PFM:REP 25->138|PF01750|7e-27|51.3|113/128|HycI| HM:PFM:NREP 1 HM:PFM:REP 23->151|PF01750|4.2e-38|43.4|129/130|HycI| GO:PFM:NREP 2 GO:PFM GO:0008047|"GO:enzyme activator activity"|PF01750|IPR000671| GO:PFM GO:0008233|"GO:peptidase activity"|PF01750|IPR000671| RP:SCP:NREP 1 RP:SCP:REP 5->160|1cfzA|5e-43|34.4|154/162|c.56.1.1| HM:SCP:REP 4->166|1cfzA_|9.8e-41|36.6|161/0|c.56.1.1|1/1|HybD-like| OP:NHOMO 260 OP:NHOMOORG 172 OP:PATTERN -------------------------------------1------------------------------ 1-2---1----------------------------------------------------------------------------1111--------------1-----------------------11-111-1111---22111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-11--1---1---------1----------1-212---111-1------------------------------------11-----11111-----------1----1-1------------------------------------------------------1-------1---11------1----1-1----11----------------12-11-121221122212122122--1111---1111---------1--------111-1111-1-------------11----1-1--1-----1-1------1-112--2222222222-2222222222222222222---1---13333333333333333-2222222--1------------------------1----111111-------------------1---------------------------1------------------------------1-------------------------------------------------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 164 STR:RPRED 82.8 SQ:SECSTR #ccccEEEEEEccTTcGGGGHHHHHHHHHHHHEEccTTEEEEEEETccGGGHHHHccccEEEEEEEccccccTTcEEEEETTHHHHHHccTcccHHHHHHHHHHHHHHHTTccccEEEEEEEcccccccccc#ccHHHHTTHHHHHHHHHHHHHTTTcccEEGGGc################################ DISOP:02AL 1-2,184-186,190-193,197-199| PSIPRED cccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccEEEEEEcHHccccccEEEEEcHHHHHHHcccccccHHHccHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHcHHHHHHHHHcccccHHHHHHccc //