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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : hycD
DDBJ      :hycD         formate hydrogenlyase, subunit D
Swiss-Prot:HYCD_ECOLI   RecName: Full=Formate hydrogenlyase subunit 4;         Short=FHL subunit 4;AltName: Full=Hydrogenase 3 component D;

Homologs  Archaea  40/68 : Bacteria  373/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
:307 amino acids
:PSIPRED
:RPS:PFM   12->219 PF00146 * NADHdh 8e-09 32.7 %
:HMM:PFM   12->294 PF00146 * NADHdh 3.1e-22 28.8 274/311  
:BLT:SWISS 1->291 HYCD_ECOLI e-136 90.7 %
:PROS 38->53|PS00667|COMPLEX1_ND1_1
:PROS 194->207|PS00668|COMPLEX1_ND1_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70020.1 GT:GENE hycD GT:PRODUCT formate hydrogenlyase, subunit D GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2970132..2971055) GB:FROM 2970132 GB:TO 2971055 GB:DIRECTION - GB:GENE hycD GB:PRODUCT formate hydrogenlyase, subunit D GB:NOTE identified by match to protein family HMM PF00146 GB:PROTEIN_ID ACF70020.1 GB:DB_XREF GI:194409801 GB:GENE:GENE hycD LENGTH 307 SQ:AASEQ MSVFYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSIAPADSGWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIYLFAIARFFFSIAGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNIADTIYHWPVARSIPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFAVLKWGISLKQLVVLQMFVGVFLPWGQMETFSAGGLLLALVIAVVKLIVGVLVIALFENSMARLRFCATSRVTWAGFGFAFLAFVSLLAA GT:EXON 1|1-307:0| SW:ID HYCD_ECOLI SW:DE RecName: Full=Formate hydrogenlyase subunit 4; Short=FHL subunit 4;AltName: Full=Hydrogenase 3 component D; SW:GN Name=hycD; Synonyms=hevD; OrderedLocusNames=b2722, JW2692; SW:KW Cell inner membrane; Cell membrane; Complete proteome; Membrane;Oxidoreductase; Transmembrane. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->291|HYCD_ECOLI|e-136|90.7|291/307| GO:SWS:NREP 6 GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| PROS 38->53|PS00667|COMPLEX1_ND1_1|PDOC00570| PROS 194->207|PS00668|COMPLEX1_ND1_2|PDOC00570| TM:NTM 8 TM:REGION 5->27| TM:REGION 66->88| TM:REGION 95->117| TM:REGION 130->152| TM:REGION 169->191| TM:REGION 216->238| TM:REGION 253->275| TM:REGION 286->307| SEG 250->273|agglllalviavvklivgvlvial| SEG 292->306|agfgfaflafvslla| RP:PFM:NREP 1 RP:PFM:REP 12->219|PF00146|8e-09|32.7|202/306|NADHdh| HM:PFM:NREP 1 HM:PFM:REP 12->294|PF00146|3.1e-22|28.8|274/311|NADHdh| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF00146|IPR001694| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00146|IPR001694| OP:NHOMO 587 OP:NHOMOORG 417 OP:PATTERN 111-2-11111111--1---1--------1-----1-11111-1-313-1122132242531-1--1- --211----------1-11-1-----11111-1111-1--1----1--1-------------1----------------2111-31-11111-------------1--11--------------1--111-11-1----11332--1--1--1--11------1-1-111-1---111-1--1-------1----------------------------------------1-------------------------------------------------------------------------------------------1---1----------2-------1-1--1--1-2221----22--2----12------11112-1------311111111111111---1----1-1-1-------1----11-------------11111111422-112311111-----111-111111111111---1--1-------111111111111111222212113112111111--1111112-111-----11---------11----1-1---121222-2222322152112-1---111-------1-1111111-23121111----------------------------1--1--1---11122212213332322233-323332233232322322322221--22222222222222222233333331-2111111111111111-----11111--1-----1----------1111111--11-11111111-1-1--111--------------------------1-------1111--2-111111------------------------------------12-111-11-11- -------------------------------------------------------------------------------------------------1-------1-------------------------------------11------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc //