[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : nrdB
DDBJ      :nrdB         ribonucleoside-diphosphate reductase, beta subunit
Swiss-Prot:RIR2_SALTY   RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;         EC=1.17.4.1;AltName: Full=Ribonucleotide reductase 1;AltName: Full=Protein B2;AltName: Full=Protein R2;

Homologs  Archaea  2/68 : Bacteria  560/915 : Eukaryota  7/199 : Viruses  12/175   --->[See Alignment]
a.25.1
:376 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->342 1jprB PDBj 0.0 98.2 %
:RPS:PDB   2->341 2av8A PDBj 3e-76 97.9 %
:RPS:SCOP  2->341 1av8A  a.25.1.2 * 6e-72 98.2 %
:HMM:SCOP  2->341 1xikA_ a.25.1.2 * 5.7e-118 40.3 %
:RPS:PFM   33->335 PF00268 * Ribonuc_red_sm 2e-40 41.1 %
:HMM:PFM   31->159 PF00268 * Ribonuc_red_sm 8.2e-16 21.7 129/281  
:HMM:PFM   199->329 PF00268 * Ribonuc_red_sm 3.1e-18 28.9 121/281  
:BLT:SWISS 1->376 RIR2_SALTY 0.0 100.0 %
:PROS 115->131|PS00368|RIBORED_SMALL

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67902.1 GT:GENE nrdB GT:PRODUCT ribonucleoside-diphosphate reductase, beta subunit GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 2431360..2432490 GB:FROM 2431360 GB:TO 2432490 GB:DIRECTION + GB:GENE nrdB GB:PRODUCT ribonucleoside-diphosphate reductase, beta subunit GB:NOTE identified by match to protein family HMM PF00268 GB:PROTEIN_ID ACF67902.1 GB:DB_XREF GI:194407683 GB:GENE:GENE nrdB LENGTH 376 SQ:AASEQ MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL GT:EXON 1|1-376:0| SW:ID RIR2_SALTY SW:DE RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; EC=1.17.4.1;AltName: Full=Ribonucleotide reductase 1;AltName: Full=Protein B2;AltName: Full=Protein R2; SW:GN Name=nrdB; OrderedLocusNames=STM2278; SW:KW Complete proteome; DNA replication; Iron; Metal-binding;Oxidoreductase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->376|RIR2_SALTY|0.0|100.0|376/376| GO:SWS:NREP 4 GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| PROS 115->131|PS00368|RIBORED_SMALL|PDOC00317| BL:PDB:NREP 1 BL:PDB:REP 2->342|1jprB|0.0|98.2|341/341| RP:PDB:NREP 1 RP:PDB:REP 2->341|2av8A|3e-76|97.9|340/340| RP:PFM:NREP 1 RP:PFM:REP 33->335|PF00268|2e-40|41.1|263/277|Ribonuc_red_sm| HM:PFM:NREP 2 HM:PFM:REP 31->159|PF00268|8.2e-16|21.7|129/281|Ribonuc_red_sm| HM:PFM:REP 199->329|PF00268|3.1e-18|28.9|121/281|Ribonuc_red_sm| GO:PFM:NREP 3 GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF00268|IPR000358| GO:PFM GO:0009186|"GO:deoxyribonucleoside diphosphate metabolic process"|PF00268|IPR000358| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00268|IPR000358| RP:SCP:NREP 1 RP:SCP:REP 2->341|1av8A|6e-72|98.2|340/340|a.25.1.2| HM:SCP:REP 2->341|1xikA_|5.7e-118|40.3|340/0|a.25.1.2|1/1|Ferritin-like| OP:NHOMO 662 OP:NHOMOORG 581 OP:PATTERN -------------------------11----------------------------------------- 1---121211121111111-11111211111111111111----111-111112111-111--111111-1-111111--1--1-11111-1--------------1---11111111111111--------------------11121-111----------11--------------------------11-11111111111111111----111111-111111111111------------------------------------1-1--1---1111111-11-----------1111111111111111---111----111111111111-1--11111--111-------------------111-----1----------1---1-------------------------12-----1--------1-1--------1-1111111111111--1111-1---11--11---111111111111111-1-111111111111111111111111111111111112111111111111111-1111111111111111---1-------------1-------------11--1111111111111111111111111111111111111111111111111111111111--11-111-11111111122222222222-2222222222222222222111111212221222222232212122222221-2223222332221111111111111111111111111111--111111111111111111111121111111111111111111111111111112112111111111111111-1--------------111---1-------------------------------1-- --11------------------------------------------------------------------------------------------------------------211------------------------------------------------------------------------------11---- ---1-1-------------1-1-11-----------11-1------------------------------------------------------------------------------------------------------------------------1---2--------1- STR:NPRED 343 STR:RPRED 91.2 SQ:SECSTR #cccccccccccGGGcccccccccccccccccccHHHHHHHHHHHHHcccGGGcccTTHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEETTEEEEEcHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTcccTTccHHHHHHHHHHHHHHHHHHTTccccccccccccGGGGTTccccc################################ DISOP:02AL 1-1,9-12| PSIPRED ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccEEEEEEcccccHHHHccccc //