[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : nuoF
DDBJ      :nuoF         NADH oxidoreductase (quinone), f subunit
Swiss-Prot:NUOF_SALTY   RecName: Full=NADH-quinone oxidoreductase subunit F;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit F;AltName: Full=NDH-1 subunit F;

Homologs  Archaea  8/68 : Bacteria  549/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.12c.142.1d.15.13
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->421 3i9v1 PDBj e-113 50.1 %
:RPS:SCOP  7->246 2fug12  c.142.1.1 * 3e-90 53.6 %
:RPS:SCOP  248->330 2fug13  d.15.13.1 * 2e-20 42.0 %
:RPS:SCOP  335->425 2fug11  a.29.12.1 * 4e-17 36.7 %
:HMM:SCOP  4->247 2fug12 c.142.1.1 * 2.8e-86 53.5 %
:HMM:SCOP  248->331 2fug13 d.15.13.1 * 1.9e-21 50.0 %
:HMM:SCOP  332->436 2fug11 a.29.12.1 * 3.9e-32 39.4 %
:RPS:PFM   54->227 PF01512 * Complex1_51K 4e-63 71.6 %
:RPS:PFM   249->284 PF10531 * SLBB 6e-04 48.6 %
:RPS:PFM   340->381 PF10589 * NADH_4Fe-4S 3e-11 57.1 %
:HMM:PFM   54->226 PF01512 * Complex1_51K 8.8e-53 55.3 150/151  
:HMM:PFM   336->381 PF10589 * NADH_4Fe-4S 1e-20 50.0 46/46  
:HMM:PFM   253->296 PF10531 * SLBB 3.7e-10 40.9 44/59  
:BLT:SWISS 1->445 NUOF_SALTY 0.0 100.0 %
:PROS 174->189|PS00644|COMPLEX1_51K_1
:PROS 349->360|PS00645|COMPLEX1_51K_2

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70324.1 GT:GENE nuoF GT:PRODUCT NADH oxidoreductase (quinone), f subunit GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2479408..2480745) GB:FROM 2479408 GB:TO 2480745 GB:DIRECTION - GB:GENE nuoF GB:PRODUCT NADH oxidoreductase (quinone), f subunit GB:NOTE identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959 GB:PROTEIN_ID ACF70324.1 GB:DB_XREF GI:194410105 GB:GENE:GENE nuoF LENGTH 445 SQ:AASEQ MKNVIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW GT:EXON 1|1-445:0| SW:ID NUOF_SALTY SW:DE RecName: Full=NADH-quinone oxidoreductase subunit F; EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit F;AltName: Full=NDH-1 subunit F; SW:GN Name=nuoF; OrderedLocusNames=STM2324; SW:KW 4Fe-4S; Complete proteome; Flavoprotein; FMN; Iron; Iron-sulfur;Metal-binding; NAD; Oxidoreductase; Quinone; Ubiquinone. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->445|NUOF_SALTY|0.0|100.0|445/445| GO:SWS:NREP 6 GO:SWS GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|4Fe-4S| GO:SWS GO:0051536|"GO:iron-sulfur cluster binding"|Iron-sulfur| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| PROS 174->189|PS00644|COMPLEX1_51K_1|PDOC00555| PROS 349->360|PS00645|COMPLEX1_51K_2|PDOC00555| BL:PDB:NREP 1 BL:PDB:REP 21->421|3i9v1|e-113|50.1|397/437| RP:PFM:NREP 3 RP:PFM:REP 54->227|PF01512|4e-63|71.6|162/162|Complex1_51K| RP:PFM:REP 249->284|PF10531|6e-04|48.6|35/54|SLBB| RP:PFM:REP 340->381|PF10589|3e-11|57.1|42/46|NADH_4Fe-4S| HM:PFM:NREP 3 HM:PFM:REP 54->226|PF01512|8.8e-53|55.3|150/151|Complex1_51K| HM:PFM:REP 336->381|PF10589|1e-20|50.0|46/46|NADH_4Fe-4S| HM:PFM:REP 253->296|PF10531|3.7e-10|40.9|44/59|SLBB| GO:PFM:NREP 4 GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| RP:SCP:NREP 3 RP:SCP:REP 7->246|2fug12|3e-90|53.6|239/243|c.142.1.1| RP:SCP:REP 248->330|2fug13|2e-20|42.0|81/84|d.15.13.1| RP:SCP:REP 335->425|2fug11|4e-17|36.7|90/105|a.29.12.1| HM:SCP:REP 4->247|2fug12|2.8e-86|53.5|243/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 248->331|2fug13|1.9e-21|50.0|82/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 332->436|2fug11|3.9e-32|39.4|104/0|a.29.12.1|1/1|Nqo1C-terminal domain-like| OP:NHOMO 1106 OP:NHOMOORG 726 OP:PATTERN ------------------------1---11----1---------1--1----------1-1------- 11222---------12211-12--23111111322211111121-1--1-----1-----11311123411----------1-11112--11-1-----1-11--21111--------------1---1-1-1-1-22222333111111111--11------11--11--------------11111331--------------------------------------------------------------1---------------------------------------------------------------------145-2133133311121------3-2123--23113436331221121--3--111111111233221133333311111111111-33333433221122223332223333112222333322311111111322-23111111111111111111111111111111121221-22112222222222222222222222223344412331331222223323321222121111111113232131-2-1--3-----343243275111111651--1---------------------11112---2---1-------------1----21--221111111111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111111111111141121---------------11111111111-1111221122222-1111111111111--------------111111111111111112111111------------------------------------3223333333221 ----111-211-11111111111111111121111111121111111111111111111111111----1--211------1111111-12111111111111112-1-1115221-111-111111113B1-112--1111111-111-11-11-11111111111411311111111H1112131341111131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 397 STR:RPRED 89.2 SQ:SECSTR ####################cTTTTHHHHHHTTcTHHHHHHHHcccHHHHHHHHHTTTcccTTTTcccHHHHHTTcccccccc#cEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHHTTcccTTGGGcccccEEEEEEccccGGGGcHHHHHHHHTTcccccccccccTTTccGGGccEEEEEHHHHHTHHHHHHccHHHHHTccccccccEEEEEEEccccccEEEEEETTccHHHHHHTTTccccccE##EEEEccccccccEcHHHHTccccTTTTGGGcccccccEEEEEETTccHHHHHHHHHHHHHHHcccccHHHHTTTTHHHHHHHHHTTTcccHHHHHHHHHHHHHH#TTccccTHHHHHHHHHHHHHHHHHHHHHH######################## DISOP:02AL 1-2,4-4| PSIPRED ccccccccccccEEEEEccccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHcccccccccccEEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccHHcccccccEEEEEEcccccccccHHHHHHHHccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccEEEEEccccHHHHHHHHcccccccccEEEEEccccccccccHHHccccccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccc //