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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : pepD
DDBJ      :pepD         aminoacyl-histidine dipeptidase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  263/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:485 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->485 2qyvB PDBj e-129 53.7 %
:RPS:PDB   12->482 3dljA PDBj 5e-33 10.9 %
:RPS:SCOP  12->264 1q7l.1  c.56.5.4 * 8e-26 10.6 %
:HMM:SCOP  9->486 1fnoA4 c.56.5.4 * 1.8e-63 33.2 %
:RPS:PFM   72->155 PF01546 * Peptidase_M20 2e-04 37.7 %
:RPS:PFM   200->264 PF07687 * M20_dimer 8e-04 55.7 %
:HMM:PFM   72->480 PF01546 * Peptidase_M20 1.6e-24 24.7 166/171  
:BLT:SWISS 1->485 PEPD_ECOLI 0.0 89.7 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66933.1 GT:GENE pepD GT:PRODUCT aminoacyl-histidine dipeptidase GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(368937..370394) GB:FROM 368937 GB:TO 370394 GB:DIRECTION - GB:GENE pepD GB:PRODUCT aminoacyl-histidine dipeptidase GB:NOTE identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 GB:PROTEIN_ID ACF66933.1 GB:DB_XREF GI:194406714 GB:GENE:GENE pepD LENGTH 485 SQ:AASEQ MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKGLYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWLQADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGGEIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVAADNVGALKTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK GT:EXON 1|1-485:0| BL:SWS:NREP 1 BL:SWS:REP 1->485|PEPD_ECOLI|0.0|89.7|485/485| BL:PDB:NREP 1 BL:PDB:REP 7->485|2qyvB|e-129|53.7|460/463| RP:PDB:NREP 1 RP:PDB:REP 12->482|3dljA|5e-33|10.9|422/471| RP:PFM:NREP 2 RP:PFM:REP 72->155|PF01546|2e-04|37.7|77/308|Peptidase_M20| RP:PFM:REP 200->264|PF07687|8e-04|55.7|61/109|M20_dimer| HM:PFM:NREP 1 HM:PFM:REP 72->480|PF01546|1.6e-24|24.7|166/171|Peptidase_M20| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| GO:PFM GO:0005515|"GO:protein binding"|PF07687|IPR011650| GO:PFM GO:0016787|"GO:hydrolase activity"|PF07687|IPR011650| RP:SCP:NREP 1 RP:SCP:REP 12->264|1q7l.1|8e-26|10.6|235/280|c.56.5.4| HM:SCP:REP 9->486|1fnoA4|1.8e-63|33.2|259/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 310 OP:NHOMOORG 274 OP:PATTERN --------------------------------------------------111--------------- -1--------------------------------------------------------------------------------------2222-222---111111----1---------------11-111-11-1--------1-----------------------------------------------1-111111111111111-1--1-11111---1--------1-------------------1-----------------------------------------------------------------------11-13333333131-111122211114-31-----------------31-------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------11-----------11----------1----1-1------1111----11111111111-1--------1111--112---1---11111111111111111111--2----------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---------------1111111111111111111111111--1-----------------------------11111111111111-----------------1------111111111---------------------------------------- -----------2-----------------------------------------------------------------------------------------------1-1-----------------------------------------------------1------------11-----11-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 485 STR:RPRED 100.0 SQ:SECSTR HHHHHHTHHHcHHHHHHHHHTcccccccHHHHHHHHHHHHHHTTcEEEEEcccEEEcccEEEcccTTccEEEEEEEcccccccGGGEccTccccTTccEEETTEEEcTTTTTTTTTHHHHHHHHHHHHTTcccccEEEEEEEccGGGTTTTHHHHHHHHTTccEEEEcccccccccEEEEEEcEGGHHHHHHHHHEEEEEEEEEEEEcccHccEETTTcTTcccccHHHHHHHHHTTccTTcccccTTTTTTcccccHHHHHHHHTcccEHTcccTTcHHHHHHHHTccccccccHHHHHHHHHTccEEEEEEEEccccccccccEEccEEHHHHHHHHHHHEEEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEEEEEccEEccTTcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHTccEEcccccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHccc DISOP:02AL 1-1| PSIPRED cccHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccEEEEEEcccEEcccccccccccccccEEEEEEccEEEccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHcccccccEEEEEccccccEEEEEEccccccEEEEEEEEEEEEccEEEEEEEEEEcccccccccHHHccccHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccEEEccccEEEEEEEccEEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEEEccccccccccccEEEEcHHHHHHHHHHHHHHHHccc //