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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : prfA
DDBJ      :prfA         peptide chain release factor 1
Swiss-Prot:RF1_SALTY    RecName: Full=Peptide chain release factor 1;         Short=RF-1;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->354 2b3tB PDBj e-152 93.0 %
:RPS:PDB   8->358 3d5aX PDBj e-106 46.3 %
:RPS:SCOP  8->348 1gqeA  e.38.1.1 * e-115 35.7 %
:HMM:SCOP  28->357 1rq0A_ e.38.1.1 * 5.9e-106 45.3 %
:RPS:PFM   70->178 PF03462 * PCRF 1e-25 56.9 %
:RPS:PFM   211->306 PF00472 * RF-1 7e-18 54.8 %
:HMM:PFM   65->178 PF03462 * PCRF 6.3e-46 56.1 114/116  
:HMM:PFM   215->321 PF00472 * RF-1 1.2e-41 48.6 107/114  
:HMM:PFM   5->51 PF05213 * Corona_NS2A 0.00014 34.0 47/248  
:BLT:SWISS 1->360 RF1_SALTY 0.0 100.0 %
:PROS 228->244|PS00745|RF_PROK_I
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66893.1 GT:GENE prfA GT:PRODUCT peptide chain release factor 1 GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(1921139..1922221) GB:FROM 1921139 GB:TO 1922221 GB:DIRECTION - GB:GENE prfA GB:PRODUCT peptide chain release factor 1 GB:NOTE identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 GB:PROTEIN_ID ACF66893.1 GB:DB_XREF GI:194406674 GB:GENE:GENE prfA LENGTH 360 SQ:AASEQ MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQMMLDDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSEQE GT:EXON 1|1-360:0| SW:ID RF1_SALTY SW:DE RecName: Full=Peptide chain release factor 1; Short=RF-1; SW:GN Name=prfA; OrderedLocusNames=STM1776; SW:KW Complete proteome; Cytoplasm; Methylation; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->360|RF1_SALTY|0.0|100.0|360/360| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 228->244|PS00745|RF_PROK_I|PDOC00607| COIL:NAA 29 COIL:NSEG 1 COIL:REGION 73->101| SEG 90->101|eqleqqlqvlll| BL:PDB:NREP 1 BL:PDB:REP 7->354|2b3tB|e-152|93.0|300/300| RP:PDB:NREP 1 RP:PDB:REP 8->358|3d5aX|e-106|46.3|350/354| RP:PFM:NREP 2 RP:PFM:REP 70->178|PF03462|1e-25|56.9|109/115|PCRF| RP:PFM:REP 211->306|PF00472|7e-18|54.8|93/107|RF-1| HM:PFM:NREP 3 HM:PFM:REP 65->178|PF03462|6.3e-46|56.1|114/116|PCRF| HM:PFM:REP 215->321|PF00472|1.2e-41|48.6|107/114|RF-1| HM:PFM:REP 5->51|PF05213|0.00014|34.0|47/248|Corona_NS2A| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 8->348|1gqeA|e-115|35.7|336/362|e.38.1.1| HM:SCP:REP 28->357|1rq0A_|5.9e-106|45.3|329/333|e.38.1.1|1/1|Release factor| OP:NHOMO 2222 OP:NHOMOORG 1101 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222222222222112222222222222222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222233222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222232222222222322222221122222222122222222222222222322222222222233333333222222222222222222222222222222222221222223222222222222222222122223122222212222222222122333323323-22233333332332323332223322332332232222333331323231222222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222222222 33--221-511-1111221111211111111112121111111222111111111111121211111112111111111111111111-21121111111111111-1612322233222124321231BJ2-32421222-222222222223222232111111-124311114254M33323456728A3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 352 STR:RPRED 97.8 SQ:SECSTR ######cHHHHHTHHHHHHHHHTTcTTTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHTcEEEEEEEEEcTTccEEEEEEEEEcTTHHHHHGGGccEEEEEEccccccccccEEEEEEEEEEEcccccccccccGGGEEEEEEccccccHHHHHHcccEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccGGGGccccEEEETTTTEEEETTTTEEEccHHHHTTTccHHHHHHHHHHHHHHHHHHHcc## DISOP:02AL 1-2,38-38,42-42,283-305,351-353,355-361| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccHHHHHHHcccEEEEEEEccccccccccEEEEEEEEEccccccccccccHHHEEEEEEEccccccccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccc //