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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : prpR
DDBJ      :prpR         propionate catabolism operon regulatory protein PrpR
Swiss-Prot:PRPR_SALTY   RecName: Full=Propionate catabolism operon regulatory protein;

Homologs  Archaea  0/68 : Bacteria  620/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.1.26c.37.1
:541 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->201 2pjuD PDBj 1e-94 91.5 %
:BLT:PDB   223->531 1ojlA PDBj 2e-54 44.6 %
:RPS:PDB   200->481 1e32A PDBj 8e-46 13.6 %
:RPS:PDB   502->532 3e7lD PDBj 4e-06 25.8 %
:RPS:SCOP  215->420 1lt7A  c.1.26.1 * 2e-45 10.4 %
:RPS:SCOP  447->532 1ntcA  a.4.1.12 * 1e-13 20.2 %
:HMM:SCOP  220->474 1ny5A2 c.37.1.20 * 1.1e-62 42.4 %
:HMM:SCOP  447->533 1etoB_ a.4.1.12 * 7.8e-14 31.0 %
:RPS:PFM   35->203 PF06506 * PrpR_N 2e-41 52.1 %
:RPS:PFM   223->394 PF00158 * Sigma54_activat 2e-50 60.7 %
:RPS:PFM   497->532 PF02954 * HTH_8 5e-05 50.0 %
:HMM:PFM   222->396 PF00158 * Sigma54_activat 2.4e-66 54.2 166/168  
:HMM:PFM   32->202 PF06506 * PrpR_N 1.5e-60 42.1 171/175  
:HMM:PFM   497->533 PF02954 * HTH_8 1e-14 48.6 37/42  
:BLT:SWISS 1->541 PRPR_SALTY 0.0 99.8 %
:PROS 367->372|PS00134|TRYPSIN_HIS
:PROS 316->331|PS00676|SIGMA54_INTERACT_2
:PROS 447->456|PS00688|SIGMA54_INTERACT_3

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF69890.1 GT:GENE prpR GT:PRODUCT propionate catabolism operon regulatory protein PrpR GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(463214..464839) GB:FROM 463214 GB:TO 464839 GB:DIRECTION - GB:GENE prpR GB:PRODUCT propionate catabolism operon regulatory protein PrpR GB:NOTE identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329 GB:PROTEIN_ID ACF69890.1 GB:DB_XREF GI:194409671 GB:GENE:GENE prpR LENGTH 541 SQ:AASEQ MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAKAGKLTSSIGIVTYQETIPALLAFQKTFHLRLEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTRRQRVDYPSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGNIRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDANALQDVLARFKGDKSAAARYLGISRTTLWRRLKAGAKDQSDN GT:EXON 1|1-541:0| SW:ID PRPR_SALTY SW:DE RecName: Full=Propionate catabolism operon regulatory protein; SW:GN Name=prpR; OrderedLocusNames=STM0367; SW:KW ATP-binding; Complete proteome; DNA-binding; Nucleotide-binding;Transcription; Transcription regulation;Two-component regulatory system. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->541|PRPR_SALTY|0.0|99.8|541/541| GO:SWS:NREP 6 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|Two-component regulatory system| PROS 367->372|PS00134|TRYPSIN_HIS|PDOC00124| PROS 316->331|PS00676|SIGMA54_INTERACT_2|PDOC00579| PROS 447->456|PS00688|SIGMA54_INTERACT_3|PDOC00579| BL:PDB:NREP 2 BL:PDB:REP 14->201|2pjuD|1e-94|91.5|188/208| BL:PDB:REP 223->531|1ojlA|2e-54|44.6|285/292| RP:PDB:NREP 2 RP:PDB:REP 200->481|1e32A|8e-46|13.6|257/438| RP:PDB:REP 502->532|3e7lD|4e-06|25.8|31/63| RP:PFM:NREP 3 RP:PFM:REP 35->203|PF06506|2e-41|52.1|167/173|PrpR_N| RP:PFM:REP 223->394|PF00158|2e-50|60.7|163/168|Sigma54_activat| RP:PFM:REP 497->532|PF02954|5e-05|50.0|36/42|HTH_8| HM:PFM:NREP 3 HM:PFM:REP 222->396|PF00158|2.4e-66|54.2|166/168|Sigma54_activat| HM:PFM:REP 32->202|PF06506|1.5e-60|42.1|171/175|PrpR_N| HM:PFM:REP 497->533|PF02954|1e-14|48.6|37/42|HTH_8| GO:PFM:NREP 10 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF06506|IPR010524| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF06506|IPR010524| GO:PFM GO:0003677|"GO:DNA binding"|PF06506|IPR010524| GO:PFM GO:0005524|"GO:ATP binding"|PF06506|IPR010524| GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 2 RP:SCP:REP 215->420|1lt7A|2e-45|10.4|192/305|c.1.26.1| RP:SCP:REP 447->532|1ntcA|1e-13|20.2|84/91|a.4.1.12| HM:SCP:REP 220->474|1ny5A2|1.1e-62|42.4|238/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 447->533|1etoB_|7.8e-14|31.0|87/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 5711 OP:NHOMOORG 627 OP:PATTERN -------------------------------------------------------------------- 7LN-----------------------------------------------------------------------------1--63965999A27331--336356I5C651111111111111113337435775411-1----1-1111-----11----------111---------------------5147777777858767779966658882683611323333O1--------------------4----1-----11------2---------------------------------------------------HI3JDCCEDCE7D7-N445112-6---A--4-bX8HE92DA497A-12-CCG444422222B8BAB444AC66933233332335-A89898974841866567766687BF54365BB9BC35622222222A332277E11111111--111111111111111----15888546538LLMKMKFCCCCJJKOEFEE8CKMLHMJG-1DFDGH877EFBCC887DAD799711-----453HLJCerLMOfVEcNbbe6adbcUUgLPcefhr*KV-111-111111111111111121--DCFBAABAKBBA6ECBBBDGFHFEFFBFFEII--2BGAJ------D79B966DBBDDCDEDD-BECCFDDDCCBBEDDCDDCBDB99776CBBBACDDCDCAEABC9986A9A94-655676655787---3-----3333A3N9K1111111111111123344326121Q9MNMNLOMMMMPMKENLJ---------68CDGEEEFEEIFGE67A88886672222--F13333331111111142--------------------------13111-1---7A2 -1------------------------------------------------------------------------------------------------------------------------------------------------------------5-----------3--2-----------1--4-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 525 STR:RPRED 97.0 SQ:SECSTR #############ccEEEEEcccTHHHHHHHHHTTTTTTcEEEEEcccHHHHHHHHHHHHTTccccEEEEEHHHHHHHHTTccccEEEEcccHHHHHHHHHHTTcTTcEEEEEEEccccHHHHHHHHHHTcEEEEEEEccHHHHHHHHHHHHHTTccEEEEcHHHHHHHHHHHHHHHHHHHHHcTHHHHHHHcccEEEHccTTcccGGGcccccHHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccHHHHHHHHHTccHHcHHHHHHHHTTcEEEEEcHHHHTTccTTHHHHHHHHHHHHHHHHHHEHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTTccccTTccHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHcTHHHHHHTcccccEEEccHHHHTTcccccccccccEEEEccHHHHHHHHHHHHHHc### DISOP:02AL 1-10,195-219,271-274,475-493,534-534,536-542| PSIPRED cccccccccccccccEEEEEEHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHccccEEEcccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHccccccccccccccccccEEEccccEEEEEEHHcccHHHHHHHHHHHHcccEEEcccccEEEEEEEEEEcccccHHHHHHcccccHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHccccccc //