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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : rplT
DDBJ      :rplT         ribosomal protein L20
Swiss-Prot:RL20_SHISS   RecName: Full=50S ribosomal protein L20;

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  53/199 : Viruses  0/175   --->[See Alignment]
a.144.2
:118 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->118 1vs6Q PDBj 2e-53 100.0 %
:RPS:PDB   1->116 3bboS PDBj 4e-33 40.5 %
:RPS:SCOP  2->118 1vs6Q1  a.144.2.1 * 3e-35 89.7 %
:HMM:SCOP  61->120 1gyzA_ a.144.2.1 * 8.1e-24 61.7 %
:RPS:PFM   3->109 PF00453 * Ribosomal_L20 6e-22 60.7 %
:HMM:PFM   2->109 PF00453 * Ribosomal_L20 1.9e-50 65.7 108/108  
:BLT:SWISS 1->118 RL20_SHISS 2e-53 100.0 %
:PROS 54->70|PS00937|RIBOSOMAL_L20
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66163.1 GT:GENE rplT GT:PRODUCT ribosomal protein L20 GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1420063..1420419 GB:FROM 1420063 GB:TO 1420419 GB:DIRECTION + GB:GENE rplT GB:PRODUCT ribosomal protein L20 GB:NOTE identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032 GB:PROTEIN_ID ACF66163.1 GB:DB_XREF GI:194405944 GB:GENE:GENE rplT LENGTH 118 SQ:AASEQ MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA GT:EXON 1|1-118:0| SW:ID RL20_SHISS SW:DE RecName: Full=50S ribosomal protein L20; SW:GN Name=rplT; OrderedLocusNames=SSON_1442; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->118|RL20_SHISS|2e-53|100.0|118/118| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 54->70|PS00937|RIBOSOMAL_L20|PDOC00722| SEG 48->59|rdrrqrkrqfrq| BL:PDB:NREP 1 BL:PDB:REP 2->118|1vs6Q|2e-53|100.0|117/117| RP:PDB:NREP 1 RP:PDB:REP 1->116|3bboS|4e-33|40.5|116/119| RP:PFM:NREP 1 RP:PFM:REP 3->109|PF00453|6e-22|60.7|107/108|Ribosomal_L20| HM:PFM:NREP 1 HM:PFM:REP 2->109|PF00453|1.9e-50|65.7|108/108|Ribosomal_L20| GO:PFM:NREP 5 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00453|IPR005813| GO:PFM GO:0005622|"GO:intracellular"|PF00453|IPR005813| GO:PFM GO:0005840|"GO:ribosome"|PF00453|IPR005813| GO:PFM GO:0006412|"GO:translation"|PF00453|IPR005813| GO:PFM GO:0019843|"GO:rRNA binding"|PF00453|IPR005813| RP:SCP:NREP 1 RP:SCP:REP 2->118|1vs6Q1|3e-35|89.7|117/117|a.144.2.1| HM:SCP:REP 61->120|1gyzA_|8.1e-24|61.7|60/60|a.144.2.1|1/1|Ribosomal protein L20| OP:NHOMO 984 OP:NHOMOORG 962 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ----2------------------------------------------------------------------------------------------------------11111111--1----1-11-1-122---1---11-11---------3-1--1------1--11---2211217111111322-141111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 118 STR:RPRED 100.0 SQ:SECSTR ccccccTTHHHHHHHHHHHHcccccccTTccHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHTcccccccGGGGTTccTTTTTHHHHHHHHHcc DISOP:02AL 1-1| PSIPRED cccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHc //