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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : rpoE
DDBJ      :rpoE         RNA polymerase sigma-E factor
Swiss-Prot:RPOE_SALTY   RecName: Full=RNA polymerase sigma-E factor;AltName: Full=Sigma-24;

Homologs  Archaea  0/68 : Bacteria  606/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:191 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->187 1or7A PDBj 2e-96 99.4 %
:RPS:PDB   7->186 3dxjF PDBj 4e-25 12.0 %
:RPS:SCOP  1->108 1or7A2  a.177.1.1 * 4e-23 99.1 %
:RPS:SCOP  120->187 1or7A1  a.4.13.2 * 1e-06 100.0 %
:HMM:SCOP  1->110 1or7A2 a.177.1.1 * 1.9e-27 40.0 %
:HMM:SCOP  120->187 1or7A1 a.4.13.2 * 3.2e-16 44.1 %
:RPS:PFM   25->86 PF04542 * Sigma70_r2 2e-07 47.5 %
:RPS:PFM   131->181 PF08281 * Sigma70_r4_2 3e-08 49.0 %
:HMM:PFM   129->180 PF08281 * Sigma70_r4_2 8.3e-22 44.2 52/54  
:HMM:PFM   25->92 PF04542 * Sigma70_r2 2.4e-19 38.2 68/71  
:BLT:SWISS 1->191 RPOE_SALTY e-105 100.0 %
:PROS 46->77|PS01063|SIGMA70_ECF

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67822.1 GT:GENE rpoE GT:PRODUCT RNA polymerase sigma-E factor GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2787625..2788200) GB:FROM 2787625 GB:TO 2788200 GB:DIRECTION - GB:GENE rpoE GB:PRODUCT RNA polymerase sigma-E factor GB:NOTE identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02939 GB:PROTEIN_ID ACF67822.1 GB:DB_XREF GI:194407603 GB:GENE:GENE rpoE LENGTH 191 SQ:AASEQ MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR GT:EXON 1|1-191:0| SW:ID RPOE_SALTY SW:DE RecName: Full=RNA polymerase sigma-E factor;AltName: Full=Sigma-24; SW:GN Name=rpoE; Synonyms=sigE; OrderedLocusNames=STM2640; SW:KW Complete proteome; DNA-binding; Sigma factor; Stress response;Transcription; Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->191|RPOE_SALTY|e-105|100.0|191/191| GO:SWS:NREP 6 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0016987|"GO:sigma factor activity"|Sigma factor| GO:SWS GO:0006355|"GO:regulation of transcription, DNA-dependent"|Sigma factor| GO:SWS GO:0006950|"GO:response to stress"|Stress response| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| PROS 46->77|PS01063|SIGMA70_ECF|PDOC00814| BL:PDB:NREP 1 BL:PDB:REP 1->187|1or7A|2e-96|99.4|179/181| RP:PDB:NREP 1 RP:PDB:REP 7->186|3dxjF|4e-25|12.0|175/349| RP:PFM:NREP 2 RP:PFM:REP 25->86|PF04542|2e-07|47.5|61/70|Sigma70_r2| RP:PFM:REP 131->181|PF08281|3e-08|49.0|51/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 129->180|PF08281|8.3e-22|44.2|52/54|Sigma70_r4_2| HM:PFM:REP 25->92|PF04542|2.4e-19|38.2|68/71|Sigma70_r2| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 1->108|1or7A2|4e-23|99.1|108/113|a.177.1.1| RP:SCP:REP 120->187|1or7A1|1e-06|100.0|68/68|a.4.13.2| HM:SCP:REP 1->110|1or7A2|1.9e-27|40.0|110/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 120->187|1or7A1|3.2e-16|44.1|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1511 OP:NHOMOORG 608 OP:PATTERN -------------------------------------------------------------------- BDL1843433353254434-34224733333365553523312132112321332113--526243756641111211--1-2-----7796-811---315368A4E38---------------2322222223255587---9322212221211------22221111------------121--11142355555355-55545514445255633343231--11-LA--------------------------------------------------111-------------------------------------1531411122112224-33-321335--9--43555143231221211--C-81--4-11-1216553332212211111111113-23732325362-322164346633213122--213112111111111-1111-1-------------------------------24321122233223132333222323333122121312--22111122112441211121111--11111111322232--11--31----22-1--3114476BF15-------------------------11111415623312222212422222233222---1113------11111111111111111-1111111111111111111111221111111111111111111111111111-111111111111--17-----111112211111111121221111----------1334431224211111222----------1111222221111133242442221111--32443333--------2-2-------------------------1111-111112B2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------2------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 190 STR:RPRED 99.5 SQ:SECSTR cHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGcccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHcHHc# DISOP:02AL 1-1,191-192| PSIPRED ccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcc //