[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : rpoS
DDBJ      :rpoS         RNA polymerase sigma factor RpoS
Swiss-Prot:RPOS_SALTY   RecName: Full=RNA polymerase sigma factor rpoS;AltName: Full=Sigma-38;

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:330 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   89->314 3dxjF PDBj 9e-52 46.0 %
:RPS:PDB   7->327 3dxjF PDBj 1e-33 36.4 %
:RPS:SCOP  55->161 1sigA  a.177.1.1 * 1e-28 50.5 %
:RPS:SCOP  165->223 1iw7F1  a.4.13.1 * 2e-11 39.0 %
:RPS:SCOP  224->320 1iw7F2  a.4.13.2 * 1e-10 30.4 %
:HMM:SCOP  55->164 1ku2A2 a.177.1.1 * 1.2e-45 66.4 %
:HMM:SCOP  167->241 1rp3A1 a.4.13.1 * 1.3e-16 38.7 %
:HMM:SCOP  224->328 1iw7F2 a.4.13.2 * 1.4e-22 36.2 %
:RPS:PFM   94->145 PF04542 * Sigma70_r2 2e-08 51.9 %
:RPS:PFM   173->247 PF04539 * Sigma70_r3 1e-07 36.0 %
:RPS:PFM   263->314 PF04545 * Sigma70_r4 7e-05 52.1 %
:HMM:PFM   94->164 PF04542 * Sigma70_r2 2.4e-25 42.3 71/71  
:HMM:PFM   174->249 PF04539 * Sigma70_r3 9.2e-23 36.8 76/78  
:HMM:PFM   262->315 PF04545 * Sigma70_r4 4.7e-18 50.0 50/50  
:HMM:PFM   56->89 PF00140 * Sigma70_r1_2 2e-14 61.8 34/37  
:BLT:SWISS 1->330 RPOS_SALTY 0.0 100.0 %
:PROS 118->131|PS00715|SIGMA70_1
:PROS 287->313|PS00716|SIGMA70_2

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF69602.1 GT:GENE rpoS GT:PRODUCT RNA polymerase sigma factor RpoS GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(3040100..3041092) GB:FROM 3040100 GB:TO 3041092 GB:DIRECTION - GB:GENE rpoS GB:PRODUCT RNA polymerase sigma factor RpoS GB:NOTE identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02394; match to protein family HMM TIGR02937 GB:PROTEIN_ID ACF69602.1 GB:DB_XREF GI:194409383 GB:GENE:GENE rpoS LENGTH 330 SQ:AASEQ MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE GT:EXON 1|1-330:0| SW:ID RPOS_SALTY SW:DE RecName: Full=RNA polymerase sigma factor rpoS;AltName: Full=Sigma-38; SW:GN Name=rpoS; Synonyms=katF; OrderedLocusNames=STM2924; SW:KW Complete proteome; DNA-binding; Sigma factor; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->330|RPOS_SALTY|0.0|100.0|330/330| GO:SWS:NREP 5 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0016987|"GO:sigma factor activity"|Sigma factor| GO:SWS GO:0006355|"GO:regulation of transcription, DNA-dependent"|Sigma factor| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| PROS 118->131|PS00715|SIGMA70_1|PDOC00592| PROS 287->313|PS00716|SIGMA70_2|PDOC00592| BL:PDB:NREP 1 BL:PDB:REP 89->314|3dxjF|9e-52|46.0|226/349| RP:PDB:NREP 1 RP:PDB:REP 7->327|3dxjF|1e-33|36.4|316/349| RP:PFM:NREP 3 RP:PFM:REP 94->145|PF04542|2e-08|51.9|52/70|Sigma70_r2| RP:PFM:REP 173->247|PF04539|1e-07|36.0|75/78|Sigma70_r3| RP:PFM:REP 263->314|PF04545|7e-05|52.1|48/49|Sigma70_r4| HM:PFM:NREP 4 HM:PFM:REP 94->164|PF04542|2.4e-25|42.3|71/71|Sigma70_r2| HM:PFM:REP 174->249|PF04539|9.2e-23|36.8|76/78|Sigma70_r3| HM:PFM:REP 262->315|PF04545|4.7e-18|50.0|50/50|Sigma70_r4| HM:PFM:REP 56->89|PF00140|2e-14|61.8|34/37|Sigma70_r1_2| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 3 RP:SCP:REP 55->161|1sigA|1e-28|50.5|107/305|a.177.1.1| RP:SCP:REP 165->223|1iw7F1|2e-11|39.0|59/61|a.4.13.1| RP:SCP:REP 224->320|1iw7F2|1e-10|30.4|92/100|a.4.13.2| HM:SCP:REP 55->164|1ku2A2|1.2e-45|66.4|110/0|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 167->241|1rp3A1|1.3e-16|38.7|75/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 224->328|1iw7F2|1.4e-22|36.2|105/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2920 OP:NHOMOORG 930 OP:PATTERN -------------------------------------------------------------------- 2234722222222233333-36222333333235557465433431112222121111114473665CDB41111111211382254411111111111111112211142222222222222211-1111111115555611155U8A7775568866687866579AB757555557555532-1122255777777667566667667777666666657332222228721222222222212222222111211211111111111111111111111111111111111111111111111111111111111111166666665667667667666555666326647655555667656674112427222433333224222232223233333333333-33335333333232233333333322233333444433322222222222223432222222222222212222222222222222222322223666676455656645555545666565522334242223225324334233342222222333344333243223223332445544434556557341111111111111111111111111553333434433343333343333343333432-2543422222243343444445444444-44444343444443443343334444434444444454444444424324422433333333333223233333444422344222222222222222222222222234333333353333333332222222223555544444545332222222222222222442211222222222243111111-11111111111111111112132111111231 -------1----------------------------------------------------------------------------------------------------3------------------------------------------------------------------4212K122436689-64881---6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 321 STR:RPRED 97.3 SQ:SECSTR ######HHHHHHHHHHHHHHTTTccHHHHHHHHHHHHTccTcTTccccccccHHcccTTTHHHHHHHHHHTccHHHHHHHHHHEHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTcccGGGcc### DISOP:02AL 1-4,28-55| PSIPRED cccccccHHHHHHHHHcccccccccccHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccEEccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHcc //