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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : rpsA
DDBJ      :rpsA         ribosomal protein S1
Swiss-Prot:RS1_SHIFL    RecName: Full=30S ribosomal protein S1;

Homologs  Archaea  3/68 : Bacteria  880/915 : Eukaryota  88/199 : Viruses  0/175   --->[See Alignment]
a.152.1b.40.4
:557 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   186->260 2oceA PDBj 7e-15 46.7 %
:BLT:PDB   277->309 1sroA PDBj 2e-05 51.5 %
:BLT:PDB   363->398 2bh8B PDBj 3e-05 97.2 %
:BLT:PDB   451->520 1sroA PDBj 1e-07 40.0 %
:RPS:PDB   43->520 3bzcA PDBj 5e-48 12.2 %
:RPS:SCOP  51->197 1gu9A  a.152.1.1 * 1e-20 15.8 %
:RPS:SCOP  172->284 1wi5A  b.40.4.5 * 5e-24 24.8 %
:RPS:SCOP  273->355 2ba0A1  b.40.4.5 * 1e-12 19.3 %
:RPS:SCOP  342->432 1jjgA  b.40.4.5 * 7e-10 10.9 %
:RPS:SCOP  449->520 1sroA  b.40.4.5 * 7e-13 38.9 %
:HMM:SCOP  1->113 1wi5A_ b.40.4.5 * 9e-24 35.4 %
:HMM:SCOP  91->172 1q46A2 b.40.4.5 * 6.9e-17 24.4 %
:HMM:SCOP  189->273 1go3E1 b.40.4.5 * 3.5e-28 49.4 %
:HMM:SCOP  255->341 1wi5A_ b.40.4.5 * 2.5e-27 41.9 %
:HMM:SCOP  350->435 1q46A2 b.40.4.5 * 4.7e-22 42.4 %
:HMM:SCOP  429->539 1wi5A_ b.40.4.5 * 1.9e-25 38.2 %
:RPS:PFM   197->257 PF00575 * S1 3e-12 48.4 %
:RPS:PFM   277->309 PF00575 * S1 6e-04 39.4 %
:RPS:PFM   449->518 PF00575 * S1 3e-14 54.3 %
:HMM:PFM   19->86 PF00575 * S1 2.6e-14 30.9 68/74  
:HMM:PFM   103->171 PF00575 * S1 4.7e-16 31.9 69/74  
:HMM:PFM   189->260 PF00575 * S1 1.4e-26 50.0 72/74  
:HMM:PFM   274->347 PF00575 * S1 1.4e-24 42.5 73/74  
:HMM:PFM   361->434 PF00575 * S1 4.2e-23 39.7 73/74  
:HMM:PFM   449->520 PF00575 * S1 1.8e-23 50.0 72/74  
:BLT:SWISS 1->557 RS1_SHIFL 0.0 99.5 %
:REPEAT 4|199->283|284->370|371->457|458->520
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70041.1 GT:GENE rpsA GT:PRODUCT ribosomal protein S1 GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1070181..1071854 GB:FROM 1070181 GB:TO 1071854 GB:DIRECTION + GB:GENE rpsA GB:PRODUCT ribosomal protein S1 GB:NOTE identified by match to protein family HMM PF00575; match to protein family HMM TIGR00717 GB:PROTEIN_ID ACF70041.1 GB:DB_XREF GI:194409822 GB:GENE:GENE rpsA LENGTH 557 SQ:AASEQ MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE GT:EXON 1|1-557:0| SW:ID RS1_SHIFL SW:DE RecName: Full=30S ribosomal protein S1; SW:GN Name=rpsA; OrderedLocusNames=SF0907, S0971; SW:KW Acetylation; Complete proteome; Phosphoprotein; Repeat;Ribonucleoprotein; Ribosomal protein; RNA-binding. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->557|RS1_SHIFL|0.0|99.5|557/557| GO:SWS:NREP 3 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| NREPEAT 1 REPEAT 4|199->283|284->370|371->457|458->520| SEG 24->39|vrgvvvaidkdvvlvd| SEG 64->78|vgdevdvaldavedg| SEG 321->332|vvnvgdvvevmv| SEG 376->390|dfgifigldggidgl| SEG 521->530|akdeadekda| BL:PDB:NREP 4 BL:PDB:REP 186->260|2oceA|7e-15|46.7|75/729| BL:PDB:REP 277->309|1sroA|2e-05|51.5|33/76| BL:PDB:REP 363->398|2bh8B|3e-05|97.2|36/86| BL:PDB:REP 451->520|1sroA|1e-07|40.0|69/76| RP:PDB:NREP 1 RP:PDB:REP 43->520|3bzcA|5e-48|12.2|459/730| RP:PFM:NREP 3 RP:PFM:REP 197->257|PF00575|3e-12|48.4|61/74|S1| RP:PFM:REP 277->309|PF00575|6e-04|39.4|33/74|S1| RP:PFM:REP 449->518|PF00575|3e-14|54.3|70/74|S1| HM:PFM:NREP 6 HM:PFM:REP 19->86|PF00575|2.6e-14|30.9|68/74|S1| HM:PFM:REP 103->171|PF00575|4.7e-16|31.9|69/74|S1| HM:PFM:REP 189->260|PF00575|1.4e-26|50.0|72/74|S1| HM:PFM:REP 274->347|PF00575|1.4e-24|42.5|73/74|S1| HM:PFM:REP 361->434|PF00575|4.2e-23|39.7|73/74|S1| HM:PFM:REP 449->520|PF00575|1.8e-23|50.0|72/74|S1| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 51->197|1gu9A|1e-20|15.8|146/172|a.152.1.1| RP:SCP:REP 172->284|1wi5A|5e-24|24.8|113/119|b.40.4.5| RP:SCP:REP 273->355|2ba0A1|1e-12|19.3|82/83|b.40.4.5| RP:SCP:REP 342->432|1jjgA|7e-10|10.9|91/102|b.40.4.5| RP:SCP:REP 449->520|1sroA|7e-13|38.9|71/76|b.40.4.5| HM:SCP:REP 1->113|1wi5A_|9e-24|35.4|113/0|b.40.4.5|1/6|Nucleic acid-binding proteins| HM:SCP:REP 91->172|1q46A2|6.9e-17|24.4|82/0|b.40.4.5|2/6|Nucleic acid-binding proteins| HM:SCP:REP 189->273|1go3E1|3.5e-28|49.4|85/0|b.40.4.5|3/6|Nucleic acid-binding proteins| HM:SCP:REP 255->341|1wi5A_|2.5e-27|41.9|86/0|b.40.4.5|4/6|Nucleic acid-binding proteins| HM:SCP:REP 350->435|1q46A2|4.7e-22|42.4|85/0|b.40.4.5|5/6|Nucleic acid-binding proteins| HM:SCP:REP 429->539|1wi5A_|1.9e-25|38.2|110/0|b.40.4.5|6/6|Nucleic acid-binding proteins| OP:NHOMO 1558 OP:NHOMOORG 971 OP:PATTERN --------------------------------11--------1------------------------- 2231111111111111111-1111111111111111111111221111111111111111111111121211111111111112111122221211111111111212111111111111111121111111112144433---31222322222222222222211223222212222212211111111123222222223222222213333223333332222223212222222222222222222211121221211122112222222-2222222222222222222222222222222222222211222111212233333334334322333222333223122122221123112222112212111111111112111111211211111111111-221221211111111111111111112222122222212111111111111122111111111111111111111111-1111122212111111111111111111123111111113222211222222222221221112211111111111211111212332332332231333122324222234222111111111111111111131122112222221332211111212111111221121-1322111111122222222222222222-222222222222222222222222222222222222222222222222222212222222222221122111111111112222221111221212222222222222222222111111111211111111111112221222222222222222222222222112222222211111111212-------------------------1211111-11111 --------------111--11111111111111111-------1111111111111111111--1----1--1---1-1--1111112-1211---111-1-------3------------------1-12111-----1--------1--------------------------1231H232138444-53123---2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 511 STR:RPRED 91.7 SQ:SECSTR #########cccEEEEEcccccEEEEEEEEEccEEEEEccccccccccccHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEEEEEEEcccGGGccHHHHHHHHHHHHHHHHHHHTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccHHHHHHHHcHHHHHHccGGGccHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHHTcTTccHTcTHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEcccccEEEEETTTccccccccHHHHccTTccccccEEEEETTTTEEEEccc##################################### DISOP:02AL 356-360,519-550,556-558| PSIPRED ccHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEcccccEEEEHHHccccccccccccccEEEEEEEEEEccccEEEEEEHHHcccccHHHHHHHHHcccEEEEEEEEEEccEEEEEcccccccccHHHcccccccccccccccEEEEEEEEEcccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEccEEEEEEHHHccccccccHHHHcccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccEEEEEEEEccEEEEEEcccEEEEEEHHHcccccccccHHHHcccccEEEEEEEEEcccccEEEEEHHHHccccHHHHHHHcccccEEEEEEEEEccccEEEEEcccEEEEEEHHHcccccccccHHHHcccccEEEEEEEEEcccccEEEEEEEccccccccccccccccccEEEEEEEEEEcccEEEEEccccEEEEEHHHccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcc //