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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : truD
DDBJ      :truD         tRNA pseudouridine synthase D
Swiss-Prot:TRUD_SALTY   RecName: Full=tRNA pseudouridine synthase D;         EC=5.4.99.-;AltName: Full=tRNA-uridine isomerase D;AltName: Full=tRNA pseudouridylate synthase D;

Homologs  Archaea  40/68 : Bacteria  236/915 : Eukaryota  94/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:349 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->340 1si7A PDBj e-171 86.2 %
:RPS:SCOP  3->340 1sb7A  d.265.1.4 * e-135 88.5 %
:HMM:SCOP  1->341 1szwA_ d.265.1.4 * 1.5e-100 41.3 %
:RPS:PFM   37->337 PF01142 * TruD 3e-47 43.6 %
:HMM:PFM   2->337 PF01142 * TruD 1.4e-107 44.1 329/378  
:BLT:SWISS 1->349 TRUD_SALTY 0.0 100.0 %
:PROS 77->90|PS01268|UPF0024

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70189.1 GT:GENE truD GT:PRODUCT tRNA pseudouridine synthase D GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(3043826..3044875) GB:FROM 3043826 GB:TO 3044875 GB:DIRECTION - GB:GENE truD GB:PRODUCT tRNA pseudouridine synthase D GB:NOTE identified by match to protein family HMM PF01142; match to protein family HMM TIGR00094 GB:PROTEIN_ID ACF70189.1 GB:DB_XREF GI:194409970 GB:GENE:GENE truD LENGTH 349 SQ:AASEQ MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE GT:EXON 1|1-349:0| SW:ID TRUD_SALTY SW:DE RecName: Full=tRNA pseudouridine synthase D; EC=5.4.99.-;AltName: Full=tRNA-uridine isomerase D;AltName: Full=tRNA pseudouridylate synthase D; SW:GN Name=truD; OrderedLocusNames=STM2928; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->349|TRUD_SALTY|0.0|100.0|349/349| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| PROS 77->90|PS01268|UPF0024|PDOC00975| BL:PDB:NREP 1 BL:PDB:REP 1->340|1si7A|e-171|86.2|340/340| RP:PFM:NREP 1 RP:PFM:REP 37->337|PF01142|3e-47|43.6|296/361|TruD| HM:PFM:NREP 1 HM:PFM:REP 2->337|PF01142|1.4e-107|44.1|329/378|TruD| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01142|IPR001656| GO:PFM GO:0003723|"GO:RNA binding"|PF01142|IPR001656| GO:PFM GO:0009451|"GO:RNA modification"|PF01142|IPR001656| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01142|IPR001656| RP:SCP:NREP 1 RP:SCP:REP 3->340|1sb7A|e-135|88.5|338/342|d.265.1.4| HM:SCP:REP 1->341|1szwA_|1.5e-100|41.3|341/341|d.265.1.4|1/1|Pseudouridine synthase| OP:NHOMO 402 OP:NHOMOORG 370 OP:PATTERN ------------------111-111--11-1111122-2222211111111111-111111111---- -----------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------11111---------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------1---1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-11111111-11--211111111111111111112112211111111111111111111111111111111--11111------11111111111111111-111111111111111111111111111111111111111111111111111--111111111111---1-----111111111111111-111--111-------1111111111111111111111---------1111111111111111111111111------1----11-------------------------------------------------- ----112-----221-----111111-11--------------11111--------------1--1111111-1-11--11-----11-111--1-11111--1-----11111111--11-1-22-1-34111111---1-11-----12--1-1111------1-1114111-1--16111--1-1--1---1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 340 STR:RPRED 97.4 SQ:SECSTR cccGGGcccccccccccccccccGGGEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHTTccTTcEEEccccccccEEEEEEEEEccccccccTTTcccTTccEEEEEEEcccccTTcccEEEEEEEEcccccHHHHHHHHHHHHHHcEEccccGGGGcGGGHHHHHHHHHHTcccccccHHHHHHHHHHHHHHHHHHHHHHHTTcccTTcccTTcEEEETTcccEEEccGGGHHHHHHHHHTTcEEEEEEEcccccccccHHHHHHHHHHTTTcHHHHHHHHHTTcccEEEEcEEccEEEEEEEEETTEEEEEEEEETTccTHHHHTTTccc######### DISOP:02AL 1-4,343-350| PSIPRED ccccHHHHHHHccccccEEEEEcccccEEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHcccHHHEEEccccccccEEEEEEEEEcccccHHHHHcccccccEEEEEEEEccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccEEEccccccHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHccccccHHHHHHccccccEEEEEEEEcccEEEEEcccEEEEEEEccccHHHHHHHHHHHccccccccccc //