[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptococcus pneumoniae G54 (spne4)
Gene : ACF54843.1
DDBJ      :             ABC transporter, permease protein
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  474/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:419 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   103->233 3ftjA PDBj 2e-07 31.5 %
:RPS:PFM   260->410 PF02687 * FtsX 2e-08 30.7 %
:HMM:PFM   262->412 PF02687 * FtsX 2.7e-26 23.2 151/175  
:HMM:PFM   18->75 PF08374 * Protocadherin 0.00026 22.4 58/221  
:BLT:SWISS 1->419 YKNZ_BACSU 9e-41 37.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF54843.1 GT:GENE ACF54843.1 GT:PRODUCT ABC transporter, permease protein GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 695284..696543 GB:FROM 695284 GB:TO 696543 GB:DIRECTION + GB:PRODUCT ABC transporter, permease protein GB:NOTE identified by match to protein family HMM PF02687 GB:PROTEIN_ID ACF54843.1 GB:DB_XREF GI:194356395 LENGTH 419 SQ:AASEQ MQNLKFAFSSIMAHKMRSLLTMIGIIIGVSSVVVIMALGDSLSRQVNKDMTKSQKNISVFFSPKKSKDGSFTQKQSAFTVSGKEEEVPVEPPKPQESWVQEAAKLKGVDSYYVTNSTNAILTYQDKKVENANLTGGNRTYMDAVKNEIIAGRSLREQDFKEFASVILLDEELSISLFESPQEAINKVVEVNGFSYRVIGVYTSPEAKRSKIYGFGGLPITTNISLAANFNVDEIANIVFRVNDTSLTPTLGPELARKMTELAGLQQGEYQVADESLVFAEIQQSFSFMTTIISSIAGISLFVGGTGVMNIMLVSVTERTREIGLRKALGATRANILIQFLIESMILTLLGGLIGLTIASGLTALAGLLLQGLIEGIEVGVSIPVALFSLAVSASVGMIFGVLPANKASKLDPIEALRYE GT:EXON 1|1-419:0| BL:SWS:NREP 1 BL:SWS:REP 1->419|YKNZ_BACSU|9e-41|37.6|394/397| TM:NTM 4 TM:REGION 19->41| TM:REGION 291->313| TM:REGION 335->357| TM:REGION 380->402| SEG 23->35|igiiigvssvvvi| SEG 83->94|keeevpveppkp| SEG 284->295|sfsfmttiissi| SEG 345->377|iltllggligltiasgltalaglllqgliegie| BL:PDB:NREP 1 BL:PDB:REP 103->233|3ftjA|2e-07|31.5|130/214| RP:PFM:NREP 1 RP:PFM:REP 260->410|PF02687|2e-08|30.7|137/177|FtsX| HM:PFM:NREP 2 HM:PFM:REP 262->412|PF02687|2.7e-26|23.2|151/175|FtsX| HM:PFM:REP 18->75|PF08374|0.00026|22.4|58/221|Protocadherin| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF02687|IPR003838| OP:NHOMO 702 OP:NHOMOORG 483 OP:PATTERN --------------------------------------11-1--1----2525--------------- 176-2-1-111-----------------------------111-1---------------2-----------------112-------2222-121----232233--23---------------3333323333322222---1-232222111111-----1-12233-1-1-111-1--1---112211-1222222222232223111112222----1-122211231-111-1----111--111-----1111--------11---111---111211121111111111111222222222222222122-1111413121111111--1-1--111--1---2-12-2231212-2112131117121---1-111--21-11--2-1--1111-11-12---1------11-1111111111-1-1-1---1---------------1-----21-----------------------------------1-----1111-1--------1111-11------------1---21----1221-11211111111121321111----1111-----2-21-1224425232211111111111-1-------11-----221-11--11111221-111--1-111112--1-1--------111--1111111112-1-1111111111121111111---123211111111111111111211111-11-322222212222--1-----------11--11-1111-------11111111-1--211112222-1111-212-----------1-1------1---12----------------11------------11----------------------------11--1--1-21 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 130 STR:RPRED 31.0 SQ:SECSTR ######################################################################################################HTcTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEcTTHHHHHTccEEEEccccHHHHHHTccEEEEEHHHHHHHHTT#cccTTcEEEETTEEEEEEEEEEEHHHHHHHTTcccccEEEEEEcTTccHHHHH########################################################################################################################################################################################## DISOP:02AL 62-81,206-208| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHccHHcccHHHHHHHHccccccEEEEEEccEEEEEEccEEEEEEEEEEEcHHHHHHccEEEcccccccHHHHcccccEEEEcHHHHHHHccccccccccEEEEccEEEEEEEEEEccccccccccccccccHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccc //