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Streptococcus pneumoniae G54 (spne4)
Gene : ACF54999.1
DDBJ      :             helicase, RecD/TraA family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  545/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
a.60.2c.37.1
:788 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   179->733 3gplA PDBj 2e-43 27.6 %
:RPS:PDB   53->177 1bvsB PDBj 4e-06 15.2 %
:RPS:PDB   189->740 3e1sA PDBj 4e-57 28.0 %
:RPS:SCOP  97->162 1c7yA2  a.60.2.1 * 7e-07 13.6 %
:RPS:SCOP  189->515 1w36D1  c.37.1.19 * 1e-28 19.7 %
:RPS:SCOP  548->735 1w36D2  c.37.1.19 * 3e-17 24.1 %
:HMM:SCOP  188->497 1w36D1 c.37.1.19 * 3.1e-44 30.6 %
:HMM:SCOP  448->736 1w36D2 c.37.1.19 * 2e-59 36.7 %
:RPS:PFM   353->473,661->708 PF01443 * Viral_helicase1 2e-10 52.1 %
:HMM:PFM   638->709 PF01443 * Viral_helicase1 1.6e-07 20.3 64/226  
:HMM:PFM   429->469 PF02562 * PhoH 0.00058 29.3 41/205  
:HMM:PFM   334->401 PF00580 * UvrD-helicase 8.5e-06 26.2 61/533  
:BLT:SWISS 334->735 EX5A_ECOLI 5e-34 33.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF54999.1 GT:GENE ACF54999.1 GT:PRODUCT helicase, RecD/TraA family GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(359623..361989) GB:FROM 359623 GB:TO 361989 GB:DIRECTION - GB:PRODUCT helicase, RecD/TraA family GB:NOTE identified by match to protein family HMM TIGR01448 GB:PROTEIN_ID ACF54999.1 GB:DB_XREF GI:194356551 LENGTH 788 SQ:AASEQ MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRAKPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLAKLANYGIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEARDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGEQKSHHLETIQKHITTIEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLADLLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQVLAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKRDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEIVIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHAIQHIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWNRIPAMIGITDTDLKEIFGK GT:EXON 1|1-788:0| BL:SWS:NREP 1 BL:SWS:REP 334->735|EX5A_ECOLI|5e-34|33.5|385/608| SEG 27->42|eiddtdaedfddfeii| SEG 243->254|lleqtltlless| BL:PDB:NREP 1 BL:PDB:REP 179->733|3gplA|2e-43|27.6|510/516| RP:PDB:NREP 2 RP:PDB:REP 53->177|1bvsB|4e-06|15.2|125/183| RP:PDB:REP 189->740|3e1sA|4e-57|28.0|514/517| RP:PFM:NREP 1 RP:PFM:REP 353->473,661->708|PF01443|2e-10|52.1|143/220|Viral_helicase1| HM:PFM:NREP 3 HM:PFM:REP 638->709|PF01443|1.6e-07|20.3|64/226|Viral_helicase1| HM:PFM:REP 429->469|PF02562|0.00058|29.3|41/205|PhoH| HM:PFM:REP 334->401|PF00580|8.5e-06|26.2|61/533|UvrD-helicase| GO:PFM:NREP 1 GO:PFM GO:0004386|"GO:helicase activity"|PF01443|IPR000606| RP:SCP:NREP 3 RP:SCP:REP 97->162|1c7yA2|7e-07|13.6|66/86|a.60.2.1| RP:SCP:REP 189->515|1w36D1|1e-28|19.7|314/348|c.37.1.19| RP:SCP:REP 548->735|1w36D2|3e-17|24.1|170/190|c.37.1.19| HM:SCP:REP 188->497|1w36D1|3.1e-44|30.6|297/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 448->736|1w36D2|2e-59|36.7|237/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 661 OP:NHOMOORG 563 OP:PATTERN ------------------------------------1------------------------------- ----2---------1------1--11-----11111-111-222----1-----------11-11-11111-----------------1111--------1--1-111-1111111122111112221221223-1111-----1-3-11-------11111--2-1112--111---1111-111------1111111111111111111111111111111111111111-111111111111111112111111221111111112211111111111111111111111111111111111111111111211111111111211111111111111111111121112112-----1-11-1121---1-------------1113--1---1------------32334231-----11------------------------11111111221---------------11----------------------------------1------1--------21--------------1-1-1---2-----11---------1---2331123131111121221-1-4-----1221-------------------1----2111-12-211111222211121111111112--11------111111-1111111111111-1111111111111111111111111111111111111111111111111111-111111111111-11----------111111111-11----111111111111111-1111111111111-111221112212-11121111112-1111-11111111111--1-11111111111111--1----1-211-1-----22--11--------------1- ------1-------------------------------------------------------------------------------------------------------3----1-----1--11----------------11--------------------------3--1-1--191-111-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 696 STR:RPRED 88.3 SQ:SECSTR ############################################EEcccccHEEEcEEcHHHHHcccTTcHHHHHHHHHHHHHHHTcccHHHHHHcTTccHHHHHHHHHHHHHcccGGGGcccTTHHHHHHHHHHTTTGGGccEEHHHHHHHHHHHHTcTTccHHHHHHHHHTTcccHHHHHHHccccGGGTcccccHHHHHTTcccEEHHHHHHHHHHHHHHHHHHHHHHHTccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHTccHHEEEccccccccccccEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccTTTTTTccHHHHHHHHHHTTccEEEEEccTTccHHHHHHHHHHcTTHHHHTTccTcccccEEEEEccHHHHHHHHHHHTccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHHHHHHccccEEEcccccHHHHTcHHHHHHHHHHTTccHHHHHHHcccccTTEEEEEcccTTcHHHHHHHHHHTTcGGGcEEEEcccccTTcHHHHHHHHHHHHccccccEEccEEEccEEcTTcEEEEccccTTTTccTTcEEEEEEEcHHHHHHHHcccEEEEETTEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEEEEEcGGGGGGccHHHHHHHHHTEEEEEEEEEcHHHHHHHHHcccccccccHHHHHHHHHTT################################################ DISOP:02AL 1-1,310-310,742-761| PSIPRED ccEEEEEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEcccccccEEEEEEEEEEccccccEEEEEEEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHcccHHHccccEEEEEEccHHHHHHHHHHccccHHHHHHHHcccccccHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHccccccHHHccccccEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccEEEcccEEEEEEEccccccccccccEEEEccccccccccccEEEEEEcccEEEEEHHHcccccEEEEEEEHHHccccccEEEEEccccccccccHHHHHHHHHHHccEEEEEEcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcHHHccccccccccccccHHHHHcc //