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Streptococcus pneumoniae G54 (spne4)
Gene : ACF55187.1
DDBJ      :             RNA methyltransferase, TrmH family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  893/915 : Eukaryota  132/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:242 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->241 1gz0H PDBj 1e-36 42.0 %
:RPS:PDB   96->242 3e5yA PDBj 9e-36 15.6 %
:RPS:SCOP  4->75 1gz0A2  d.79.3.3 * 6e-18 26.4 %
:RPS:SCOP  76->241 1gz0A1  c.116.1.1 * 7e-49 42.9 %
:HMM:SCOP  1->77 1gz0F2 d.79.3.3 * 4.1e-17 41.6 %
:HMM:SCOP  68->242 1v2xA_ c.116.1.1 * 3.3e-50 40.7 %
:RPS:PFM   6->71 PF08032 * SpoU_sub_bind 4e-08 39.4 %
:RPS:PFM   95->235 PF00588 * SpoU_methylase 2e-30 44.7 %
:HMM:PFM   96->235 PF00588 * SpoU_methylase 1.2e-46 40.0 140/142  
:HMM:PFM   6->79 PF08032 * SpoU_sub_bind 2.6e-18 32.4 74/76  
:BLT:SWISS 6->241 TRMHL_STAAE 1e-57 48.1 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF55187.1 GT:GENE ACF55187.1 GT:PRODUCT RNA methyltransferase, TrmH family GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 1342623..1343351 GB:FROM 1342623 GB:TO 1343351 GB:DIRECTION + GB:PRODUCT RNA methyltransferase, TrmH family GB:NOTE identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 GB:PROTEIN_ID ACF55187.1 GB:DB_XREF GI:194356739 LENGTH 242 SQ:AASEQ MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL GT:EXON 1|1-242:0| BL:SWS:NREP 1 BL:SWS:REP 6->241|TRMHL_STAAE|1e-57|48.1|235/248| BL:PDB:NREP 1 BL:PDB:REP 7->241|1gz0H|1e-36|42.0|226/242| RP:PDB:NREP 1 RP:PDB:REP 96->242|3e5yA|9e-36|15.6|147/156| RP:PFM:NREP 2 RP:PFM:REP 6->71|PF08032|4e-08|39.4|66/77|SpoU_sub_bind| RP:PFM:REP 95->235|PF00588|2e-30|44.7|141/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 96->235|PF00588|1.2e-46|40.0|140/142|SpoU_methylase| HM:PFM:REP 6->79|PF08032|2.6e-18|32.4|74/76|SpoU_sub_bind| GO:PFM:NREP 4 GO:PFM GO:0008168|"GO:methyltransferase activity"|PF08032|IPR013123| GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 4->75|1gz0A2|6e-18|26.4|72/76|d.79.3.3| RP:SCP:REP 76->241|1gz0A1|7e-49|42.9|163/166|c.116.1.1| HM:SCP:REP 1->77|1gz0F2|4.1e-17|41.6|77/87|d.79.3.3|1/1|L30e-like| HM:SCP:REP 68->242|1v2xA_|3.3e-50|40.7|167/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 1906 OP:NHOMOORG 1026 OP:PATTERN -----------------------1-------------------------------------------- 2332223333332323333-332222333331322232221111123233322321131112132333233222211122122211113333332331154455443233-------111111124424434344433332---4333222222222223222322221233233332232223223321133222222222222222222222222233322232222222222222222222222222222222222222222233222222222222222222222222212222122222222222222222222222222222222222222222222222222221222233222222222232122122222223223111111111111122221222222-11111111221122222222222311221111111111111111111111112211111111111111111111111111111112211211111122122222221122222222222222211121211111111111221222211232122212122212112222222222111111111222221211111111111111111111121214112213223112331111122111121221221-11211------33323333333333232-33333333333333333332223322333233333333333333333333321333333333333111211111111122111111111111111112222222222212111111111111111112221221221122222222332332211221222111111114422222221221232221212-21212211111211221121111111111-21 1-22141-21--211----1111111-11----11111-1111----1111-11--111-1-11-111-11111111-1111-111-1---------------111--6-212233-111112211-3-232-215111-22123-21--1--21211-11--3-2-----11122232A322213-14123333112- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 235 STR:RPRED 97.1 SQ:SECSTR ######EEcHHHH#HHHHHHcGGGEEEEEEETTcccTTHHHHHHHHHcEEEEEcHHHHHHHcTTcccTTEEEEEccccGGGHHEEEEEcccEEcTcEEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTTEEGGGccccTTcEEEEEcTTTcccHHHTccGGGEEEcccccccccccHHHHHHHHHHHHHHHTT DISOP:02AL 1-1| PSIPRED ccccEEEEEHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccEEEEEcHHHHHHHHccccccEEEEEEcccccccHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHccHHHcccEEEEccHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEccccccccHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHc //