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Streptococcus pneumoniae G54 (spne4)
Gene : ACF55303.1
DDBJ      :             Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  575/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.55.3
:816 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->169 2p1jB PDBj 8e-09 30.4 %
:BLT:PDB   247->338 1hv8A PDBj 2e-04 36.7 %
:BLT:PDB   647->787 3crw1 PDBj 9e-05 21.0 %
:RPS:PDB   6->265 3cg7B PDBj 5e-17 12.1 %
:RPS:PDB   267->315,633->787 3crw1 PDBj 2e-14 16.8 %
:RPS:SCOP  8->180 1wljA  c.55.3.5 * 5e-23 19.9 %
:RPS:SCOP  267->363 1a1vA1  c.37.1.14 * 2e-07 10.5 %
:RPS:SCOP  633->723 1gkuB2  c.37.1.16 * 4e-04 11.0 %
:HMM:SCOP  6->364 1fxxA_ c.55.3.5 * 6.9e-49 33.3 %
:HMM:SCOP  256->767 2bmfA2 c.37.1.14 * 1e-21 23.3 %
:RPS:PFM   45->162 PF00929 * Exonuc_X-T 5e-17 42.4 %
:RPS:PFM   267->316 PF00270 * DEAD 2e-05 48.0 %
:HMM:PFM   8->162 PF00929 * Exonuc_X-T 2.8e-30 36.1 155/165  
:HMM:PFM   266->318 PF00270 * DEAD 3e-09 32.7 52/167  
:HMM:PFM   682->763 PF00271 * Helicase_C 0.00029 24.0 50/78  
:HMM:PFM   598->638 PF05455 * GvpH 0.00076 36.6 41/177  
:BLT:SWISS 7->436,559->806 DING_BACSU 2e-46 31.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF55303.1 GT:GENE ACF55303.1 GT:PRODUCT Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 710387..712837 GB:FROM 710387 GB:TO 712837 GB:DIRECTION + GB:PRODUCT Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG GB:NOTE identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407 GB:PROTEIN_ID ACF55303.1 GB:DB_XREF GI:194356855 LENGTH 816 SQ:AASEQ MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMTQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRKLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHFLADLRHDGNLSSHSLFVTEDFWKRSQERAETCKLLVTNHAYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQQRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYWLEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFVKIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAVSDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQNPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIVGKRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL GT:EXON 1|1-816:0| BL:SWS:NREP 1 BL:SWS:REP 7->436,559->806|DING_BACSU|2e-46|31.2|671/931| SEG 24->39|iiqvgivviedgeivd| SEG 546->558|tsqkkiqisstks| BL:PDB:NREP 3 BL:PDB:REP 41->169|2p1jB|8e-09|30.4|125/171| BL:PDB:REP 247->338|1hv8A|2e-04|36.7|79/353| BL:PDB:REP 647->787|3crw1|9e-05|21.0|138/485| RP:PDB:NREP 2 RP:PDB:REP 6->265|3cg7B|5e-17|12.1|256/295| RP:PDB:REP 267->315,633->787|3crw1|2e-14|16.8|202/485| RP:PFM:NREP 2 RP:PFM:REP 45->162|PF00929|5e-17|42.4|118/163|Exonuc_X-T| RP:PFM:REP 267->316|PF00270|2e-05|48.0|50/167|DEAD| HM:PFM:NREP 4 HM:PFM:REP 8->162|PF00929|2.8e-30|36.1|155/165|Exonuc_X-T| HM:PFM:REP 266->318|PF00270|3e-09|32.7|52/167|DEAD| HM:PFM:REP 682->763|PF00271|0.00029|24.0|50/78|Helicase_C| HM:PFM:REP 598->638|PF05455|0.00076|36.6|41/177|GvpH| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| RP:SCP:NREP 3 RP:SCP:REP 8->180|1wljA|5e-23|19.9|166/168|c.55.3.5| RP:SCP:REP 267->363|1a1vA1|2e-07|10.5|95/136|c.37.1.14| RP:SCP:REP 633->723|1gkuB2|4e-04|11.0|91/242|c.37.1.16| HM:SCP:REP 6->364|1fxxA_|6.9e-49|33.3|273/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 256->767|2bmfA2|1e-21|23.3|279/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 909 OP:NHOMOORG 575 OP:PATTERN -------------------------------------------------------------------- 111111------1--------1---1------1---11111---1-11-------1----11-11221111--11---1111121-11-----------11222311111--------------1---------1-11111---12--------------------1----------------1--21---23233333233333333323222233322223222222222322222222222222222222333433423333322333333222222222222222222222222222222222222222222231222211111111111121211111111221113221122121123211111-222-1------------11------------------------1------------------------2-11111111-------------11------------------------------------111112222222111122221111112222322-1111112222223132252212211222222112433----1----------11111111111112111---11-111-1-----------11-11332211212332333332323332333333--11231------11111111111111111-111111111111111111111111111111111111111111121111111--111111111111---1-----1111112111111111111-1111----------1111111111111111111---------122222222222222222222222211111111111111---1-1112---1--------------11-------111112--12111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 667 STR:RPRED 81.7 SQ:SECSTR #####cEEEEEEEEEcccTTcccccccEEEEEEEEEETTEEEEEccccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHccTTcEEEEEcccHHHHTHHHHHHHHTTcccGGGcEEEEHHHHHHHHHcccHHHHHHHHHTcccccTTcHHHHHHHHHHHHHHHHHTTccccccEEEEcccGGGcTTGccccccTTGGGcHHHHHHHHHHHccHcEEEEccGGGccGGGTTccTTTccTTTcccccccGGGcccTTcccHHHHHcEEEccccccHHHHHHHHHTTTHHccEEEEEEcccGGGHHHHHHHHccccHHHHHHHHHHccGGGcTTcTTccccccTHHHHHHHHHHHHHcGGGccHHHHHHHHHccHHHHHHHHHHHccTTEEEEEcccTTcHHHHHHTTTcHHHHHHHHHHHHHEEEcGGGTccEcccEEEEEccccHHHHHHHHHHHH##################################################################################################################GGGGGcEEEEEcccccHHHHHTc#cccEEcccccccGGGEEEEEEccccccHHHHHHHHHHHHHHHHHHHTcccEEEEEEccHHHHHHHHTTccccEEEccccccHHHHHTTcccccccEEEccccccccccccccccccEEEEccccccccHHHHHHHHTTTcccccTTHHHHTHHHHHHHHHHHHHTTccccccccEEEEEcGGGGcHHHHHHT############################# DISOP:02AL 1-4| PSIPRED ccccccEEEEEEEEccccccccEEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHcccHHHHcccccHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHccccccccEEcHHHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccEEEccccccccccccccHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHcccccccccccccHHHcHHHHHHHHHHcccEEEccHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccEEEEEEEEccccccHHHHHHccccccEEEEEcccccHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEEHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHc //