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Streptococcus pneumoniae G54 (spne4)
Gene : ACF55644.1
DDBJ      :             DNA polymerase III, alpha subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  3/199 : Viruses  3/175   --->[See Alignment]
a.4.6b.29.1b.40.4b.42.4c.6.3
:1033 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->864 3e0dA PDBj e-119 37.1 %
:RPS:PDB   3->1005 3e0dA PDBj 0.0 32.3 %
:RPS:SCOP  239->361 1r8nA  b.42.4.1 * 4e-21 9.2 %
:RPS:SCOP  356->445 1fc3A  a.4.6.3 * 3e-08 10.0 %
:RPS:SCOP  611->778 1kitA2  b.29.1.8 * 1e-32 6.6 %
:RPS:SCOP  851->971 1asyA1  b.40.4.1 * 7e-11 10.7 %
:HMM:SCOP  1->87 1m65A_ c.6.3.1 * 4.8e-07 34.9 %
:HMM:SCOP  874->976 1o7iA_ b.40.4.3 * 7.2e-06 23.5 %
:RPS:PFM   3->93 PF02811 * PHP 2e-07 38.5 %
:RPS:PFM   258->659 PF07733 * DNA_pol3_alpha e-101 46.3 %
:RPS:PFM   898->964 PF01336 * tRNA_anti 2e-06 29.9 %
:HMM:PFM   241->657 PF07733 * DNA_pol3_alpha 6.6e-156 46.3 415/422  
:HMM:PFM   8->122 PF02811 * PHP 5.6e-18 33.3 114/175  
:HMM:PFM   897->962 PF01336 * tRNA_anti 9.3e-12 25.4 63/76  
:BLT:SWISS 1->1033 DPO3A_STRP6 0.0 54.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF55644.1 GT:GENE ACF55644.1 GT:PRODUCT DNA polymerase III, alpha subunit GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 797329..800430 GB:FROM 797329 GB:TO 800430 GB:DIRECTION + GB:PRODUCT DNA polymerase III, alpha subunit GB:NOTE identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 GB:PROTEIN_ID ACF55644.1 GB:DB_XREF GI:194357196 LENGTH 1033 SQ:AASEQ MIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLGLEMTVFVDDQEVNLRFLALSSVGYQQLMKLSTAKMQGEKTWSVLSQYLEDIAVIVPYFDRVESLELGCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREVPLRSRQDVFISASFLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPRFNPARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQIMLNSANSDYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIEHRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPLQAIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLFSDLYRQVGQEIKEGAFYYVKGKIQSRDGRLQMIAQEIREAVAERFWIQVKNHESDQEISRILEQFKGPIPVIIRYEEEQKTIVXPHHFVAKSNELEEKLNEIVMKTIYR GT:EXON 1|1-1033:0| BL:SWS:NREP 1 BL:SWS:REP 1->1033|DPO3A_STRP6|0.0|54.9|1033/1036| SEG 339->354|pdididipdiyrpdfi| SEG 781->800|klpenylklplleplvkvgl| BL:PDB:NREP 1 BL:PDB:REP 3->864|3e0dA|e-119|37.1|851/1148| RP:PDB:NREP 1 RP:PDB:REP 3->1005|3e0dA|0.0|32.3|977/1148| RP:PFM:NREP 3 RP:PFM:REP 3->93|PF02811|2e-07|38.5|91/177|PHP| RP:PFM:REP 258->659|PF07733|e-101|46.3|402/428|DNA_pol3_alpha| RP:PFM:REP 898->964|PF01336|2e-06|29.9|67/74|tRNA_anti| HM:PFM:NREP 3 HM:PFM:REP 241->657|PF07733|6.6e-156|46.3|415/422|DNA_pol3_alpha| HM:PFM:REP 8->122|PF02811|5.6e-18|33.3|114/175|PHP| HM:PFM:REP 897->962|PF01336|9.3e-12|25.4|63/76|tRNA_anti| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF02811|IPR004013| GO:PFM GO:0005737|"GO:cytoplasm"|PF07733|IPR011708| GO:PFM GO:0006260|"GO:DNA replication"|PF07733|IPR011708| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF07733|IPR011708| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| RP:SCP:NREP 4 RP:SCP:REP 239->361|1r8nA|4e-21|9.2|119/185|b.42.4.1| RP:SCP:REP 356->445|1fc3A|3e-08|10.0|90/119|a.4.6.3| RP:SCP:REP 611->778|1kitA2|1e-32|6.6|166/197|b.29.1.8| RP:SCP:REP 851->971|1asyA1|7e-11|10.7|121/137|b.40.4.1| HM:SCP:REP 1->87|1m65A_|4.8e-07|34.9|83/0|c.6.3.1|1/1|PHP domain-like| HM:SCP:REP 874->976|1o7iA_|7.2e-06|23.5|98/0|b.40.4.3|1/1|Nucleic acid-binding proteins| OP:NHOMO 1287 OP:NHOMOORG 914 OP:PATTERN -------------------------------------------------------------------- 3222222222222222222-22112222222222222222222232222211242221112222113232111112111111211111111111111112131224141311111111111111111111-111111111111112221122211111111111221222211111111111121111111311111111111111121111112111111122122222211111111111111111112112111111111111111211111111111111111111111111111111111111111111122221111111312322222121121111-2121122111111111212222221122212322211111222223222222222122221213122223222322-3442332333232322232221222221111111124221211111111111111111111121111111111222212221242532232222333222222224222221122223422222231222211111111111111222222131111111111121211112122222212111111111111111111111111122111222121112111111111112112111111122111111111111111111111111-11111111111111111111111111111111111111211111111111111112112222111111111111111121211111111111-11111111111111111222222222222222221111111111111111111222222222222222111111111111111111111111111111-11111121111111111111222111111121 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1--------------2---------- --------------1-----------------------------------------------------------------1---------------------------------------------1------------------------------------------------ STR:NPRED 1004 STR:RPRED 97.2 SQ:SECSTR EEcccccccTTcTTTccccHHHHHHHHHHHccccEEEEEETccTTHHHHHHHHHTTTcEEEEEEEEEEEcccTTccccEEEccHHHHHHHHHHHHHHHTccccHHHHHHTcTTEEEEHHHHTcHHHHHHHHHHHHHHHGGHHHHHTTccEEEccccccccGGGHHHHHHHHHHHTTcccccccccccccccccHHHHHHHccHHccHHHHHHHHHHHTcccccccTTccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHTTTcccccccGGGGGcHHHHHTTcccccTTTTTccHHHHccTTcccccccEEEEETTTHHHHHHHHHHHHcTTTEEEEEEEccccHHHHHHHHHHHTTccHHHHHHHHTTccccccTTTTTcccTTTTTHHHHcHHHHHHHHHHHHcTTccccEEEcccEEEEccccGGGTccEEEcTTcEEEEEEHHHHHTTTcEEEEEEEEHHHHHHHHHHHHHHHHHcccccGGGccTTcHHHHHHHHTTccTTcTTcccHHHHHHHHHHccccHHHHHHHHHHccTTGGGHHHHHHHHHTTccccccTHHHHHHHHGGGTTccccHHHHHHHHHHHccccHHHHHHHHHHHHHTcTTTHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHTTTcHHHHHHTTcccEEcccTTTcccccEEETTEEEcccTTcccccHHHHHHHHHHHccccHHHHHHHccTTTccHHHHHHHHHHTTTGGG#ccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccGcHHHHHHccccGGGHcccccccEEEEEEEEccccEEEEETTEEEEEccTTcccEEcEEEEEEEEccEEEEEEcTTcEEEEEEEEEEEccEEEccHHHHTTcccEEEEEccccTTTccHHHHHHHTcEEEEEEEEEEEccccE############################ DISOP:02AL 825-838| PSIPRED cEEccccccHHHHHHHcccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEccHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccEEHHHccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEEEccccEEEEEcHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHcccEEEEEEcccHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHccccccccccHHHHHHHcccccEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEcccccccccEEEEEccEEEEcHHHHccccHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcEEEcccHHHHHHHHHcccHHHHHHcccccEEEEEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEEHHHHHHHHHHHccccEEEEEEEEEEEccEEEEEEEEHHHHHccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEccccEEcccHHHHHHHHHHHcccccc //