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Streptococcus pneumoniae G54 (spne4)
Gene : ACF56337.1
DDBJ      :             transcriptional regulator, RpiR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  290/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.80.1
:269 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   92->207 1vimC PDBj 1e-04 33.0 %
:RPS:PDB   92->207 2amlA PDBj 2e-17 20.7 %
:RPS:SCOP  7->69 2o3fA1  a.4.1.20 * 2e-10 19.0 %
:RPS:SCOP  95->204 1j5xA  c.80.1.1 * 2e-15 18.2 %
:HMM:SCOP  87->252 1m3sA_ c.80.1.3 * 5.5e-24 29.8 %
:RPS:PFM   11->101 PF01418 * HTH_6 2e-05 33.0 %
:RPS:PFM   123->204 PF01380 * SIS 1e-05 32.9 %
:HMM:PFM   7->104 PF01418 * HTH_6 4.5e-15 28.1 96/107  
:HMM:PFM   120->224 PF01380 * SIS 1.2e-12 24.8 105/131  
:BLT:SWISS 4->252 Y189_CLOPE 4e-19 26.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF56337.1 GT:GENE ACF56337.1 GT:PRODUCT transcriptional regulator, RpiR family GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(1188927..1189736) GB:FROM 1188927 GB:TO 1189736 GB:DIRECTION - GB:PRODUCT transcriptional regulator, RpiR family GB:NOTE identified by match to protein family HMM PF01380; match to protein family HMM PF01418 GB:PROTEIN_ID ACF56337.1 GB:DB_XREF GI:194357889 LENGTH 269 SQ:AASEQ MLLQKELIPMIEANLPNMAYAEKDIAKFFLKQQPLNDYSSKALCEYLNVSKATLTRFAKKCGFKGFRQFIFKYQEMIHEKEKLALYTEATEKVLSDYEEMLRKTYTVLDEVQLERIAEMIETAERVYLYGKGSSVLALQEMKMRFMRLGVIGEVLSDEDMILWSSLLLNENCLVIGASISGQTDIVLEGLQKAADKGAKTVLMTTRKFDEEDCFFDELLLLASTDHLSYGNRISPQFPILLITDCLFSNYLESPERQYYYNQTIIHKEE GT:EXON 1|1-269:0| BL:SWS:NREP 1 BL:SWS:REP 4->252|Y189_CLOPE|4e-19|26.3|232/279| SEG 208->221|fdeedcffdellll| BL:PDB:NREP 1 BL:PDB:REP 92->207|1vimC|1e-04|33.0|97/190| RP:PDB:NREP 1 RP:PDB:REP 92->207|2amlA|2e-17|20.7|116/358| RP:PFM:NREP 2 RP:PFM:REP 11->101|PF01418|2e-05|33.0|91/102|HTH_6| RP:PFM:REP 123->204|PF01380|1e-05|32.9|82/131|SIS| HM:PFM:NREP 2 HM:PFM:REP 7->104|PF01418|4.5e-15|28.1|96/107|HTH_6| HM:PFM:REP 120->224|PF01380|1.2e-12|24.8|105/131|SIS| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01418|IPR000281| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01418|IPR000281| GO:PFM GO:0005529|"GO:sugar binding"|PF01380|IPR001347| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF01380|IPR001347| RP:SCP:NREP 2 RP:SCP:REP 7->69|2o3fA1|2e-10|19.0|63/83|a.4.1.20| RP:SCP:REP 95->204|1j5xA|2e-15|18.2|110/319|c.80.1.1| HM:SCP:REP 87->252|1m3sA_|5.5e-24|29.8|161/0|c.80.1.3|1/1|SIS domain| OP:NHOMO 444 OP:NHOMOORG 292 OP:PATTERN -------------------------------------------------------------------- -------------------------1-------------------1-----------1--1--1-11--11-------1--------------------------------------------------------------------------------------------------------11---11---111111222211122143224-1122-11-1312211131-111111111111112--2-2-------1-211--22214---4331111111111211222121211111111111111122---222221-1411-1111-1--2---2231--2----------------1-21--1--------------1----------------------------------1--2------1---11---1--------------------------------------------------------------1222222112223212222222221-1----11-1--11-111--1------1-1111111-----------------------------------------------------------------1-2-----1----------------------------------21--3--2--22222----221223-21-2-1121131-1----313222222112212222---1-----222122222222------------------111-11111111121---------------------------------------33312212222233-1--------------------------------1---------------------1----111-111-1--- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 203 STR:RPRED 75.5 SQ:SECSTR ####HHHHHHcTTHHHHTEEEEEccccEEEEEcTTccccHHHHHHHTTHHHHHHHHHTTccccTTTTcccHHHHTcTTccccEETTEEcHHHHHHTTHHHHHHHHHHHHHHHHHHHTTcTTcccEEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccccTTccEEEEEccccccHHHHHHHHHHHHccccEEEEEccT############################################################## DISOP:02AL 1-5,8-8,261-262,264-270| PSIPRED ccccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccHHHHHccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //