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Streptococcus pneumoniae G54 (spne4)
Gene : ACF56413.1
DDBJ      :             ribosomal small subunit pseudouridine synthase A
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  864/915 : Eukaryota  31/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:240 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->232 1kskA PDBj 5e-38 40.9 %
:RPS:PDB   1->237 3dh3B PDBj 3e-38 30.0 %
:RPS:SCOP  1->57 1vioA2  d.66.1.5 * 2e-13 32.1 %
:RPS:SCOP  61->235 1kskA4  d.265.1.3 * 1e-39 41.1 %
:HMM:SCOP  2->86 1c06A_ d.66.1.2 * 1.5e-15 33.3 %
:HMM:SCOP  58->237 1vioA1 d.265.1.3 * 6.9e-43 36.8 %
:RPS:PFM   64->192 PF00849 * PseudoU_synth_2 3e-11 35.9 %
:HMM:PFM   62->195 PF00849 * PseudoU_synth_2 5.1e-24 28.4 134/164  
:HMM:PFM   1->42 PF01479 * S4 1e-10 38.1 42/48  
:BLT:SWISS 1->232 RSUA_YERPE 6e-42 43.0 %
:PROS 100->114|PS01149|PSI_RSU

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF56413.1 GT:GENE ACF56413.1 GT:PRODUCT ribosomal small subunit pseudouridine synthase A GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 255227..255949 GB:FROM 255227 GB:TO 255949 GB:DIRECTION + GB:PRODUCT ribosomal small subunit pseudouridine synthase A GB:NOTE identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 GB:PROTEIN_ID ACF56413.1 GB:DB_XREF GI:194357965 LENGTH 240 SQ:AASEQ MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEFVYYMMNKPKGVISATEDPKHRTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNNGQLAHVLLSPKRHVDKTYQAQVKGIMTQEDVETFIKGIPLKDFTCQPARLEILSTDAEKNQSQIRVTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILRANII GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 1->232|RSUA_YERPE|6e-42|43.0|221/235| PROS 100->114|PS01149|PSI_RSU|PDOC00885| BL:PDB:NREP 1 BL:PDB:REP 2->232|1kskA|5e-38|40.9|220/230| RP:PDB:NREP 1 RP:PDB:REP 1->237|3dh3B|3e-38|30.0|227/241| RP:PFM:NREP 1 RP:PFM:REP 64->192|PF00849|3e-11|35.9|128/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 62->195|PF00849|5.1e-24|28.4|134/164|PseudoU_synth_2| HM:PFM:REP 1->42|PF01479|1e-10|38.1|42/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 1->57|1vioA2|2e-13|32.1|56/58|d.66.1.5| RP:SCP:REP 61->235|1kskA4|1e-39|41.1|168/172|d.265.1.3| HM:SCP:REP 2->86|1c06A_|1.5e-15|33.3|84/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 58->237|1vioA1|6.9e-43|36.8|174/0|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2056 OP:NHOMOORG 895 OP:PATTERN -------------------------------------------------------------------- 1221111111111111111-11111111111111111111111111111111111111--11111111111-1111111111122222111111-11--21333143412-1111111-11111111111111111111111111122122222222222122122122221211111211111112222-222-4444444344444422222244422232332222223332222222222222222222-21322312222211222222213333333333322333333333333333333333333333333333323324222222242422223344232222221111121111222222-22211333311111121111111111111111111111-3322222212112111222222221144121111112211111111111111312------------1111111111111-----1212-2222243343444444444344444444444443333333344443222444454444334333322244421113111111111111111121111113111211111111111111111112111233442355624545666677755556-77577--2111211-11143333444444444444-4444444444444444444444333344444444444444443544434442-433343333444--2211111222224234333333333333323333333344333333333333-3333333111111111354464444444544555666644422221112221111111111112-311111-21111--1111---12---2212221222133 11--22--31--------------------------------------------------------------------------------------------------82-----------------------------------------------------2---------1-1-24C4431111-1-114342222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 240 STR:RPRED 100.0 SQ:SECSTR EEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGccEEEEEEcTTcccccccccTTcHHHHHHHHTcccccEEccccccccEEEEEEEccTHHHHHHHcGGGcccEEEEEEEcccccHHHHHHHHTccccccccccccEEEEcEEEEEEcccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETTEEcTTTccTTcEEEccHHHHHHHHHGcc PSIPRED ccHHHHHHHcccccHHHHHHHHHcccEEEccEEEEcccEEEccccEEEEEcccEEEccccEEEEEEccccEEccccccccccHHHHHHHHcccccEEEcccccccccEEEEEEccHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHcccEEcccccccEEEEEEEEcccccEEEEEEEEEEccHHHHHHHHHHcccEEEEEEEEEEEcEEcccccccccEEEccHHHHHHHHHHHc //