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Streptococcus pneumoniae G54 (spne4)
Gene : gdhA
DDBJ      :gdhA         glutamate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  556/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
c.2.1c.58.1
:448 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->447 1bgvA PDBj e-119 49.1 %
:RPS:PDB   6->448 1bgvA PDBj 1e-95 50.3 %
:RPS:SCOP  17->204 1hwxA2  c.58.1.1 * 3e-57 29.8 %
:RPS:SCOP  208->448 1hwxA1  c.2.1.7 * 6e-59 25.1 %
:HMM:SCOP  5->197 1bgvA2 c.58.1.1 * 6.4e-76 52.3 %
:HMM:SCOP  203->450 1gtmA1 c.2.1.7 * 2.6e-74 48.1 %
:RPS:PFM   59->187 PF02812 * ELFV_dehydrog_N 1e-43 56.6 %
:RPS:PFM   203->444 PF00208 * ELFV_dehydrog 4e-54 51.3 %
:HMM:PFM   203->446 PF00208 * ELFV_dehydrog 2.4e-91 54.2 240/244  
:HMM:PFM   58->187 PF02812 * ELFV_dehydrog_N 2e-50 46.2 130/131  
:BLT:SWISS 6->448 DHE4_CORGL e-149 60.5 %
:PROS 123->136|PS00074|GLFV_DEHYDROGENASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF54796.1 GT:GENE gdhA GT:PRODUCT glutamate dehydrogenase GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 1166202..1167548 GB:FROM 1166202 GB:TO 1167548 GB:DIRECTION + GB:GENE gdhA GB:PRODUCT glutamate dehydrogenase GB:NOTE identified by match to protein family HMM PF00208; match to protein family HMM PF02812 GB:PROTEIN_ID ACF54796.1 GB:DB_XREF GI:194356348 GB:GENE:GENE gdhA LENGTH 448 SQ:AASEQ MTSAKEYIQSVFETVKARNGHEAEFLQAVEEFFNTLEPVFEKHPEYIEENILARITEPERVVSFRVPWVDRDGKIQVNRGYRVQFNSAVGPYKGGLRFHPTVNQGILKFLGFEQIFKNVLTGLPIGGGKGGSDFDPKGKTDAEVMRFCQSFMTELQKHIGPSLDVPAGDIGVGGREIGYLYGQYKRLNQFDAGVLTGKPLGFGGSLIRPEATGYGLVYYTEEMLKANGNSFAGKKVVISGSGNVAQYALQKATELGATVISVSDSNGYVIDENGIDFDLLVDVKEKRRARLTEYAAEKATATYHEGTVWTYAGNYDIALPCATQNEINGEAAKRLVAQGVICVSEGANMPSDLDAIKVYKENGIFYGPAKAANAGGVAVSALEMSQNSLRLSWTREEVDGRLKDIMTNIFNTAKTTSETYGLDKDYLAGANIAAFENVANAMIAQGIV GT:EXON 1|1-448:0| BL:SWS:NREP 1 BL:SWS:REP 6->448|DHE4_CORGL|e-149|60.5|441/447| PROS 123->136|PS00074|GLFV_DEHYDROGENASE|PDOC00071| SEG 126->131|gggkgg| SEG 292->303|teyaaekataty| BL:PDB:NREP 1 BL:PDB:REP 6->447|1bgvA|e-119|49.1|440/449| RP:PDB:NREP 1 RP:PDB:REP 6->448|1bgvA|1e-95|50.3|441/449| RP:PFM:NREP 2 RP:PFM:REP 59->187|PF02812|1e-43|56.6|129/130|ELFV_dehydrog_N| RP:PFM:REP 203->444|PF00208|4e-54|51.3|232/234|ELFV_dehydrog| HM:PFM:NREP 2 HM:PFM:REP 203->446|PF00208|2.4e-91|54.2|240/244|ELFV_dehydrog| HM:PFM:REP 58->187|PF02812|2e-50|46.2|130/131|ELFV_dehydrog_N| GO:PFM:NREP 6 GO:PFM GO:0006520|"GO:cellular amino acid metabolic process"|PF02812|IPR006097| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02812|IPR006097| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02812|IPR006097| GO:PFM GO:0006520|"GO:cellular amino acid metabolic process"|PF00208|IPR006096| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00208|IPR006096| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00208|IPR006096| RP:SCP:NREP 2 RP:SCP:REP 17->204|1hwxA2|3e-57|29.8|188/208|c.58.1.1| RP:SCP:REP 208->448|1hwxA1|6e-59|25.1|231/293|c.2.1.7| HM:SCP:REP 5->197|1bgvA2|6.4e-76|52.3|193/194|c.58.1.1|1/1|Aminoacid dehydrogenase-like, N-terminal domain| HM:SCP:REP 203->450|1gtmA1|2.6e-74|48.1|237/0|c.2.1.7|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1060 OP:NHOMOORG 782 OP:PATTERN 111-1111122222411122221-3333112211--------1--1---1113-11111111221111 122--1121121111------1---1------11111145-111-1111--111112-----11-12-11111111111111----1-2222-2111--1132331-222---------------11-11----1122222---211111111----------11-12111-1-----1----22222--1212111111111111111252222112222211111111122111111111111111111121----1-----11--11-1-------111111111111111111111-------------2111111111-211-11111111111111111111111211--111-11-1--112-1111-1---2-----1--11211-----11111111112-11---1----1-------2----1-----1111111211---------------------------------------------11131-221221111111111111111111111112222--11111123211-1112--1---112222221111-11-112-1-1-111--1121112122222232211111-----111111111111--1--11-21--111--------1------1-------2111------1-1-1111111111111-111111111111111111122211111221222222222222221111-111-111111111111---1------1-111--1111111-111--1112222222111-111111111111111---1111111111-------------------------------1--------------1-1-------------------------1221211111121 22--111-41-111--1221111111111111111-121111111111111111-1111111111-1111111112222211111111-1--111111111-1111-11212222312-11111111113D3-223111121121112-11-13-11232372311-52421141222-----4374771482211112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 448 STR:RPRED 100.0 SQ:SECSTR GGHHHHHHHHHHHHHHHHTTTcHHHHHHHHHHHHTTHHHHHTcHHHHHTTHHHHHTcccEEEEEEEEEEcTTccEEEEEEEEEEEEcccccEEEEEEEcTTccHHHHHHHHHHHHHHHHHTcccccEEEEEEccccTTccHHHHHHHHHHHHHHHGGGccTTTEEEEccTTccHHHHHHHHHHHHHHTcccGGGcccccGGGTccTTTTTHHHHHHHHHHHHHHHHTTcccTTcEEEEccccHHHHHHHHHHHHHTcEEEEEEETTEEEEcTTcHHHHHHHHHHHHccccTHHHHHHHTcEEEETccGGGccccccEEEccccTTcccHHHHHHHHHTTccEEEccccccccHHHHHHHHcTTcEEEcHHHHTTHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHccc DISOP:02AL 1-11,15-15,18-19| PSIPRED cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHccccEEEEEEEEEEccccEEEEEEEEEEEEccccccEEccEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEEccEEEEccccccHHHHHHHHHHcccEEEcccccccccccccccccEEEEEccEEEEccccccccHHHHHHHHHcccEEEEEcccccccHHHHHHHHHcccEEEcHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccc //