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Streptococcus pneumoniae G54 (spne4)
Gene : greA
DDBJ      :greA         transcription elongation factor GreA
Swiss-Prot:GREA_STRZT   RecName: Full=Transcription elongation factor greA;AltName: Full=Transcript cleavage factor greA;

Homologs  Archaea  0/68 : Bacteria  835/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.2.1d.26.1
:160 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->133 1grjA PDBj 1e-16 40.9 %
:RPS:PDB   28->157 3bmbA PDBj 1e-28 23.8 %
:RPS:SCOP  4->80 1grjA1  a.2.1.1 * 2e-14 36.4 %
:RPS:SCOP  85->157 2etnA2  d.26.1.2 * 2e-15 26.0 %
:HMM:SCOP  4->81 1grjA1 a.2.1.1 * 5.6e-25 52.6 %
:HMM:SCOP  81->159 1grjA2 d.26.1.2 * 1.8e-19 41.8 %
:RPS:PFM   26->76 PF03449 * GreA_GreB_N 4e-10 60.8 %
:RPS:PFM   83->157 PF01272 * GreA_GreB 3e-12 46.7 %
:HMM:PFM   1->76 PF03449 * GreA_GreB_N 1.9e-27 55.4 74/74  
:HMM:PFM   84->157 PF01272 * GreA_GreB 1.3e-26 48.6 74/77  
:BLT:SWISS 1->160 GREA_STRZT 6e-75 100.0 %
:PROS 19->50|PS00829|GREAB_1
:PROS 122->138|PS00830|GREAB_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF55442.1 GT:GENE greA GT:PRODUCT transcription elongation factor GreA GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(1390333..1390815) GB:FROM 1390333 GB:TO 1390815 GB:DIRECTION - GB:GENE greA GB:PRODUCT transcription elongation factor GreA GB:NOTE identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 GB:PROTEIN_ID ACF55442.1 GB:DB_XREF GI:194356994 GB:GENE:GENE greA LENGTH 160 SQ:AASEQ MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVEKTA GT:EXON 1|1-160:0| SW:ID GREA_STRZT SW:DE RecName: Full=Transcription elongation factor greA;AltName: Full=Transcript cleavage factor greA; SW:GN Name=greA; OrderedLocusNames=SPT_1455; SW:KW Coiled coil; Complete proteome; DNA-binding; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->160|GREA_STRZT|6e-75|100.0|160/160| GO:SWS:NREP 3 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| PROS 19->50|PS00829|GREAB_1|PDOC00651| PROS 122->138|PS00830|GREAB_2|PDOC00651| SEG 10->25|leekeklekeleelkl| BL:PDB:NREP 1 BL:PDB:REP 41->133|1grjA|1e-16|40.9|93/151| RP:PDB:NREP 1 RP:PDB:REP 28->157|3bmbA|1e-28|23.8|122/135| RP:PFM:NREP 2 RP:PFM:REP 26->76|PF03449|4e-10|60.8|51/73|GreA_GreB_N| RP:PFM:REP 83->157|PF01272|3e-12|46.7|75/78|GreA_GreB| HM:PFM:NREP 2 HM:PFM:REP 1->76|PF03449|1.9e-27|55.4|74/74|GreA_GreB_N| HM:PFM:REP 84->157|PF01272|1.3e-26|48.6|74/77|GreA_GreB| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF03449|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF03449|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF03449|IPR001437| GO:PFM GO:0003677|"GO:DNA binding"|PF01272|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF01272|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01272|IPR001437| RP:SCP:NREP 2 RP:SCP:REP 4->80|1grjA1|2e-14|36.4|77/78|a.2.1.1| RP:SCP:REP 85->157|2etnA2|2e-15|26.0|73/79|d.26.1.2| HM:SCP:REP 4->81|1grjA1|5.6e-25|52.6|78/0|a.2.1.1|1/1|GreA transcript cleavage protein, N-terminal domain| HM:SCP:REP 81->159|1grjA2|1.8e-19|41.8|79/79|d.26.1.2|1/1|FKBP-like| OP:NHOMO 1066 OP:NHOMOORG 837 OP:PATTERN -------------------------------------------------------------------- 12211------111-1111-1---1-111111-111-1--111-1--11---1111-111111-1111111111111111111-----111111111-1111111111111111111---11111111111111111111111112-------------------------------------11111--1111111111111111111111111111111111211111112111111111111111111111222222222222222212211111111111111111111111111111111111111111111111111111212222122222112211112111122211111111111111111--111111111111121111111111111111111111-11111111111111111111111111111111111111111111111122222211111111111111111111111111111112212222222222222222222222222222222222222222222222222212222233212222222222222211111111111111323323213222122121111111111111111111121111111121212221122222211111121111221-1111111111122111221111111111-111111111111111111122211112221222222222222221111112112222222122221111111111111122122222221222222222222211111212222212221111212111111111121111111111111122111111111111111111111111111111111111-1-1111111111111111111111111111111- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 130 STR:RPRED 81.2 SQ:SECSTR ###########################ccccEEEHHHHHHHHHHHHcGGGTTcHHHHHHHHHHHHHHHHHHHTcEEEcGGGccTTcccTTcEEEEEETTTccEEEEEEEcGGGcccTTTEEETTcHHHHHHTTccTTcEEEEEETTTEEEEEEEEEE### DISOP:02AL 1-2| PSIPRED cccccEEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcEEEcHHHccccEEEcccEEEEEEcccccEEEEEEEcHHHcccccccEEcccHHHHHHcccccccEEEEEccccEEEEEEEEEEEcc //