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Streptococcus pneumoniae G54 (spne4)
Gene : gyrB
DDBJ      :gyrB         DNA gyrase, B subunit
Swiss-Prot:GYRB_STRR6   RecName: Full=DNA gyrase subunit B;         EC=5.99.1.3;

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  189/199 : Viruses  9/175   --->[See Alignment]
b.172.1c.1.17c.52.1d.122.1d.14.1e.11.1
:648 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->383 1ei1A PDBj 4e-91 50.5 %
:BLT:PDB   420->640 3fofC PDBj 3e-56 57.2 %
:RPS:PDB   24->383 3cwvB PDBj e-104 27.4 %
:RPS:PDB   412->647 1bgwA PDBj 1e-58 26.6 %
:RPS:SCOP  12->94 1ybeA1  c.1.17.2 * 5e-15 18.1 %
:RPS:SCOP  147->284 2ox7A1  b.172.1.1 * 5e-44 10.4 %
:RPS:SCOP  304->624 1dc1A  c.52.1.11 * 6e-80 13.6 %
:HMM:SCOP  12->226 1s16A2 d.122.1.2 * 2.9e-72 55.0 %
:HMM:SCOP  230->401 1kijA1 d.14.1.3 * 2.9e-64 58.7 %
:HMM:SCOP  403->647 1bjtA_ e.11.1.1 * 6.3e-89 56.0 %
:RPS:PFM   230->385 PF00204 * DNA_gyraseB 1e-47 56.8 %
:RPS:PFM   427->529 PF01751 * Toprim 1e-12 39.2 %
:RPS:PFM   575->638 PF00986 * DNA_gyraseB_C 2e-25 71.9 %
:HMM:PFM   230->399 PF00204 * DNA_gyraseB 1.1e-68 55.6 169/173  
:HMM:PFM   576->638 PF00986 * DNA_gyraseB_C 9.4e-32 61.9 63/65  
:HMM:PFM   40->179 PF02518 * HATPase_c 2.1e-19 29.8 104/111  
:HMM:PFM   428->527 PF01751 * Toprim 7.3e-08 21.4 84/96  
:BLT:SWISS 1->648 GYRB_STRR6 0.0 99.8 %
:PROS 431->439|PS00177|TOPOISOMERASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF55069.1 GT:GENE gyrB GT:PRODUCT DNA gyrase, B subunit GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 715325..717271 GB:FROM 715325 GB:TO 717271 GB:DIRECTION + GB:GENE gyrB GB:PRODUCT DNA gyrase, B subunit GB:NOTE identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 GB:PROTEIN_ID ACF55069.1 GB:DB_XREF GI:194356621 GB:GENE:GENE gyrB LENGTH 648 SQ:AASEQ MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV GT:EXON 1|1-648:0| SW:ID GYRB_STRR6 SW:DE RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; SW:GN Name=gyrB; OrderedLocusNames=spr0715; SW:KW ATP-binding; Complete proteome; Isomerase; Nucleotide-binding;Topoisomerase. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->648|GYRB_STRR6|0.0|99.8|648/648| GO:SWS:NREP 4 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0003916|"GO:DNA topoisomerase activity"|Topoisomerase| PROS 431->439|PS00177|TOPOISOMERASE_II|PDOC00160| SEG 108->130|ggkfggggykvsgglhgvgssvv| SEG 387->404|aakarvaakrarevtrkk| BL:PDB:NREP 2 BL:PDB:REP 14->383|1ei1A|4e-91|50.5|368/391| BL:PDB:REP 420->640|3fofC|3e-56|57.2|194/196| RP:PDB:NREP 2 RP:PDB:REP 24->383|3cwvB|e-104|27.4|307/311| RP:PDB:REP 412->647|1bgwA|1e-58|26.6|233/679| RP:PFM:NREP 3 RP:PFM:REP 230->385|PF00204|1e-47|56.8|155/169|DNA_gyraseB| RP:PFM:REP 427->529|PF01751|1e-12|39.2|102/110|Toprim| RP:PFM:REP 575->638|PF00986|2e-25|71.9|64/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 230->399|PF00204|1.1e-68|55.6|169/173|DNA_gyraseB| HM:PFM:REP 576->638|PF00986|9.4e-32|61.9|63/65|DNA_gyraseB_C| HM:PFM:REP 40->179|PF02518|2.1e-19|29.8|104/111|HATPase_c| HM:PFM:REP 428->527|PF01751|7.3e-08|21.4|84/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 12->94|1ybeA1|5e-15|18.1|83/261|c.1.17.2| RP:SCP:REP 147->284|2ox7A1|5e-44|10.4|135/143|b.172.1.1| RP:SCP:REP 304->624|1dc1A|6e-80|13.6|294/310|c.52.1.11| HM:SCP:REP 12->226|1s16A2|2.9e-72|55.0|211/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 230->401|1kijA1|2.9e-64|58.7|172/172|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 403->647|1bjtA_|6.3e-89|56.0|241/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1978 OP:NHOMOORG 1130 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222322222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-12211622111211111111111111111111-1111-1111111111111111111111111-1-111111111111-111111-12112111111121111115212223341212222221319F2-426122121223221122-13-422213812121111443123222F2222252391533442222 ---11--------------1---------------111------------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 648 STR:RPRED 100.0 SQ:SECSTR ccTTcccHHHHTHHHHHcccHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEEcccHHHHHHHHHTccGGGEHTEEEEEETccccccccTTcHHHHHHHHHHHHHHHHHHHHEEcccccEEEEEETTEEccHccccccccccEEEEEEEEcTTTcccccEccHHHHHHHHHHHHHHcTTcEEEEEETTTTEETHEEEEcTTHHHHHHHHHHTTccccccccEEEEEEETTEEEEEEEEEccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHHHHHTccGcccGGGGGccHHHHTTTEEEEEEEEcGGcccccccTTccccTTHHHHHHHHHHHHHHHHHTTcTTHHHHHTTcccHHHHHHHHHHHHcccEEccEEEEHHHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHTTccHHHHHTTHTcEEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHHHHHHHHHTcTTcccHHHHHHHHHHHHTTccccH DISOP:02AL 1-18,394-415| PSIPRED ccccccccccccccHHHEEEccccHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEccEEcccccccccccEEEEEEEEEEccccccccccEEEcccccccEEEEEEEcccEEEEEEEEccEEEEEEEEccEEccccEEEccccccEEEEEEEEcHHHHcccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEcccHHHHHHHHHHccccccccccEEEEEcccccEEEEEEEEccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccEEEEEEEEccccccccccccEEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccHHHHHHHHcccccEEEEEcccccccHHcccHHHHHccHHHHHHHHHHcccccccccHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHccccccccEEEcccHHHccHHHHHHHHHcHHcEEEEEEEEccHHHHHHHHHHHcccccHHHHHHHHHccccccccc //