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Streptococcus pneumoniae G54 (spne4)
Gene : nanC
DDBJ      :nanC         neuraminidase C
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  31/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.29.1b.68.1
:740 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   115->739 2jkbA PDBj 0.0 52.6 %
:RPS:PDB   189->275 3b69A PDBj 3e-05 19.3 %
:RPS:PDB   385->620 2ebsB PDBj 2e-09 15.0 %
:RPS:SCOP  83->275 1sliA1  b.29.1.9 * 3e-27 38.2 %
:RPS:SCOP  421->712 1eurA  b.68.1.1 * 4e-27 22.5 %
:HMM:SCOP  111->270 2sliA1 b.29.1.9 * 4.9e-27 28.0 %
:HMM:SCOP  273->742 1so7A_ b.68.1.1 * 7.3e-57 30.2 %
:RPS:PFM   100->266 PF02973 * Sialidase 2e-24 40.7 %
:RPS:PFM   567->624 PF12217 * End_beta_propel 8e-04 31.0 %
:HMM:PFM   95->269 PF02973 * Sialidase 1.9e-45 38.7 168/190  
:HMM:PFM   326->336 PF02012 * BNR 6.8e-05 63.6 11/12  
:HMM:PFM   553->606 PF12293 * DUF3625 0.00014 31.5 54/241  
:BLT:SWISS 25->132 DPO3X_MYCPN 6e-06 26.9 %
:BLT:SWISS 115->739 NANB_STRPN 0.0 52.6 %
:TM

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF56230.1 GT:GENE nanC GT:PRODUCT neuraminidase C GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(1183009..1185231) GB:FROM 1183009 GB:TO 1185231 GB:DIRECTION - GB:GENE nanC GB:PRODUCT neuraminidase C GB:NOTE identified by match to protein family HMM PF02012; match to protein family HMM PF02973 GB:PROTEIN_ID ACF56230.1 GB:DB_XREF GI:194357782 GB:GENE:GENE nanC LENGTH 740 SQ:AASEQ MKKNIKQYVTLGTVVVLSAFVANSVAAQETETSEVSTPKLVQPVAPTTPISEVQPTSDNSSEVTVQPRTVETTVKDPSSTAEETPVLEKNNVTLTGGGENVTKELKDKFTSGDFTVVIKYNQSSEKGLQALFGISNSKPGQQNSYVDVFLRDNGELGMEARDTSSNKNNLVSRPASVWGKYKQEAVTNTVAVVADSVKKTYSLYANGTKVVEKKVDNFLNIKDIKGIDYYMLGGVKRAGKTAFGFNGTLENIKFFNSALDEETVKKMTTNAVTGHLIYTANDTTGSNYFRIPVLYTFSNGRVFSSIDARYGGTHDFLNKINIATSYSDDNGKTWTKPKLTLAFDDFAPVPLEWPREVGGRDLQISGGATYIDSVIVEKKNKQVLMFADVMPAGVSFREATRKDSGYKQIDGNYYLKLRKQGDTDYNYTIRENGTVYDDRTNRPTEFSVDKNFGIKQNGNYLTVEQYSVSFENNKKTEYRNGTKVHMNIFYKDALFKVVPTNYIAYISSNDHGESWSAPTLLPPIMGLNRNAPYLGPGRGIIESSTGRILIPSYTGKESAFIYSDDNGASWKVKVVPLPSSWSAEAQFVELSPGVIQAYMRTNNGKIAYLTSKDAGTTWSAPEYLKFVSNPSYGTQLSIINYSQLIDGKKAVILSTPNSTNGRKHGQIWIGLINDDNTIDWRYHHDVDYSNYGYSYSTLTELPNHEIGLMFEKFDSWSRNELHMKNVVPYITFKIEDLKKN GT:EXON 1|1-740:0| BL:SWS:NREP 2 BL:SWS:REP 25->132|DPO3X_MYCPN|6e-06|26.9|108/681| BL:SWS:REP 115->739|NANB_STRPN|0.0|52.6|624/697| TM:NTM 1 TM:REGION 6->28| BL:PDB:NREP 1 BL:PDB:REP 115->739|2jkbA|0.0|52.6|624/661| RP:PDB:NREP 2 RP:PDB:REP 189->275|3b69A|3e-05|19.3|83/626| RP:PDB:REP 385->620|2ebsB|2e-09|15.0|226/771| RP:PFM:NREP 2 RP:PFM:REP 100->266|PF02973|2e-24|40.7|162/183|Sialidase| RP:PFM:REP 567->624|PF12217|8e-04|31.0|58/450|End_beta_propel| HM:PFM:NREP 3 HM:PFM:REP 95->269|PF02973|1.9e-45|38.7|168/190|Sialidase| HM:PFM:REP 326->336|PF02012|6.8e-05|63.6|11/12|BNR| HM:PFM:REP 553->606|PF12293|0.00014|31.5|54/241|DUF3625| GO:PFM:NREP 2 GO:PFM GO:0004308|"GO:exo-alpha-sialidase activity"|PF02973|IPR004124| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02973|IPR004124| RP:SCP:NREP 2 RP:SCP:REP 83->275|1sliA1|3e-27|38.2|191/196|b.29.1.9| RP:SCP:REP 421->712|1eurA|4e-27|22.5|271/361|b.68.1.1| HM:SCP:REP 111->270|2sliA1|4.9e-27|28.0|157/0|b.29.1.9|1/1|Concanavalin A-like lectins/glucanases| HM:SCP:REP 273->742|1so7A_|7.3e-57|30.2|338/0|b.68.1.1|1/1|Sialidases| OP:NHOMO 52 OP:NHOMOORG 31 OP:PATTERN -------------------------------------------------------------------- ------1--------------------------------------------------------1------------------------2211-1------1--------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-111---22233223232-------------------------------------------22------------------------------2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 654 STR:RPRED 88.4 SQ:SECSTR #####################################################################################EEEEEEEEEcTTcEEcTTcTTHHHHTTcEEEEEEEEccccccEEEEEEEEcccTTcTTcEEEEEEETTccEEEEEEETTTTEEEEEEEccccccEETTEEccEEEEEEEETETTEEEEEETTEEcTTccEEcccccGccccccEEEEcccccTTcccccccEEEEEEEEEcccccHHHHHHHHHTTTTccccccTTEcTTcccEEEEEEEcTTcEEEEEEEccccTTTcEEEEcccEEEEEEccTTcccEEccccccccccccccccEEEEEEEccTTcTTcEEEEEETTEETTTccEETTccTTcccccEEEEccTcccEEEEcccTTcccccEEEccTTccccccEEccccccccEEEcccccTcEEEEETTEEEEEcccccEEEEcccTcccccccccEEcTTcTTcEEEEETTTEEEEEccTTcccEEccccEEEEEEEccccccccccEEEEEcccccEEEccTTcccEEEEEccTTcccEEcccTTccTTcEEEEEEccccTTccEEEEEccccEEEEEEEEcccEEEEEETcEccTccccccccEEEEEccccTTcEEEEETTTEEEEEccTTcccEEcTTcTTTcEEcccEEEEEEEcTTcEEEEEEcccEEEEEEETTTccEEEcccccTTcTEEEEEcHHHHcc# DISOP:02AL 1-5,29-71,740-741| PSIPRED ccccHHHHEEEEEEEEEEEEccccEEEcccccHHHccccccccccccccHHHcccccccccEEEEcccEEEEccccccccccccEEEEcccEEEcccccccHHHHHHHHcccccEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEcccEEEEEEEcccccccccccccEEEEEcccccccccEEEEEEEccccEEEEEEccEEEEcccccccEEccccccccEEEEEEEEEcccEEEccEEEEEEEEEccccccHHHHHHHHccccccccEEEccccccccEEEEEEEEEEccccEEEEEEEcccccccccccccEEEEEEEcccEEccccEEEEEccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccEEEEEccccccccEEEEEccEEEEEcccccccEEEEcccccccccccEEEEcccccccccccEEEEcccEEcccEEEEccccEEEccccEEEEEEEccccccccccEEccccccccccEEEEEccccEEEcccccEEEEEEccccEEEEEEcccccEEEEcccccccccccccEEEEccccEEEEEEEcccccEEEEEEccccccccccEEccccccccccEEEEEEEccccccccEEEEEEcccccccccccEEEEEEEEccccccccccccEEcccccccccEEEEEccccEEEEEEccccccccEEEEEEEEEEEEEEEHHHccc //