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Streptococcus pneumoniae G54 (spne4)
Gene : nusB
DDBJ      :nusB         transcription antitermination factor NusB
Swiss-Prot:NUSB_STRZT   RecName: Full=N utilization substance protein B homolog;         Short=Protein nusB;

Homologs  Archaea  0/68 : Bacteria  544/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.79.1
:140 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->134 1baq- PDBj 6e-15 36.9 %
:RPS:PDB   8->138 3d3cA PDBj 8e-30 34.9 %
:RPS:SCOP  8->138 1tztA  a.79.1.1 * 1e-26 31.8 %
:HMM:SCOP  8->136 1eyvA_ a.79.1.1 * 2.2e-33 43.0 %
:RPS:PFM   13->132 PF01029 * NusB 2e-17 49.1 %
:HMM:PFM   11->136 PF01029 * NusB 1.2e-34 42.4 125/134  
:BLT:SWISS 1->140 NUSB_STRZT 3e-76 100.0 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF54894.1 GT:GENE nusB GT:PRODUCT transcription antitermination factor NusB GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(385887..386309) GB:FROM 385887 GB:TO 386309 GB:DIRECTION - GB:GENE nusB GB:PRODUCT transcription antitermination factor NusB GB:NOTE identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 GB:PROTEIN_ID ACF54894.1 GB:DB_XREF GI:194356446 GB:GENE:GENE nusB LENGTH 140 SQ:AASEQ MTSPLLESRRQLRKCAFQALMSLEFGTDVETACRFAYTHDREDTDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ GT:EXON 1|1-140:0| SW:ID NUSB_STRZT SW:DE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB; SW:GN Name=nusB; OrderedLocusNames=SPT_0468; SW:KW Complete proteome; Transcription; Transcription regulation;Transcription termination. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->140|NUSB_STRZT|3e-76|100.0|140/140| GO:SWS:NREP 3 GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0006353|"GO:transcription termination"|Transcription termination| BL:PDB:NREP 1 BL:PDB:REP 8->134|1baq-|6e-15|36.9|122/139| RP:PDB:NREP 1 RP:PDB:REP 8->138|3d3cA|8e-30|34.9|126/138| RP:PFM:NREP 1 RP:PFM:REP 13->132|PF01029|2e-17|49.1|110/124|NusB| HM:PFM:NREP 1 HM:PFM:REP 11->136|PF01029|1.2e-34|42.4|125/134|NusB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01029|IPR006027| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01029|IPR006027| RP:SCP:NREP 1 RP:SCP:REP 8->138|1tztA|1e-26|31.8|129/141|a.79.1.1| HM:SCP:REP 8->136|1eyvA_|2.2e-33|43.0|128/131|a.79.1.1|1/1|NusB-like| OP:NHOMO 546 OP:NHOMOORG 544 OP:PATTERN -------------------------------------------------------------------- 11111-1-111111-11--------------------1--11111--1111-111111--11111111111-1111111111-1------------1-----------1----------------11111111111111--1111111111111111-----1-11-1111---1--------111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111-1--1111111111111111111111-11-11111111-1111111-----1111111111---1--1---------------------------------------------1-----------------------1-1--------------------------------11111--------------------------1--------------------------------------------1111-11111111111111111-11111111111111111111111111111111111111111--111111111111111111111111----1-1--11111111111111111-11-1111111111111111111111111111111111111111111111111111-1111111111111111----------1---111111111111--------------1----111-11111111----------111111111111-1111111111111111--11111111-111-11-11--------------------------111111111--1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 135 STR:RPRED 96.4 SQ:SECSTR #####cHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccTTccHcccHHHHHHHHHHHTcHHHHHHHHGGGTTcTTccccccHHHHHHHHHHHHHHHHcTccHHHHHHHHHHHHHHHccTTHHHHHHHHHHHHHHHcc DISOP:02AL 1-11,139-141| PSIPRED cccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcc //