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Streptococcus pneumoniae G54 (spne4)
Gene : pspC
DDBJ      :pspC         surface protein PspC
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  33/915 : Eukaryota  67/199 : Viruses  0/175   --->[See Alignment]
b.121.5
:769 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   201->265 1w9rA PDBj 7e-05 38.5 %
:RPS:PDB   531->719 2btvA PDBj 1e-11 6.7 %
:RPS:SCOP  543->711 1lp3A  b.121.5.2 * 8e-09 8.3 %
:RPS:PFM   449->528 PF05062 * RICH 7e-08 48.1 %
:RPS:PFM   548->716 PF09770 * PAT1 5e-08 24.6 %
:HMM:PFM   65->146 PF05062 * RICH 3e-24 34.1 82/82  
:HMM:PFM   447->528 PF05062 * RICH 3e-28 45.7 81/82  
:HMM:PFM   7->32 PF04650 * YSIRK_signal 3e-13 53.8 26/27  
:HMM:PFM   734->768 PF00746 * Gram_pos_anchor 2.1e-09 45.7 35/39  
:HMM:PFM   361->412 PF08822 * DUF1804 3.7e-05 21.2 52/165  
:BLT:SWISS 1->39,431->673,703->769 BAG_STRAG 1e-35 46.0 %
:BLT:SWISS 207->411 CD158_MOUSE 1e-04 21.8 %
:COIL
:REPEAT 8|430->444|531->546|550->564|581->595|612->626|643->657|674->688|705->719
:REPEAT 5|565->580|596->611|627->642|658->673|689->704
:REPEAT 2|445->459|720->734
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF56456.1 GT:GENE pspC GT:PRODUCT surface protein PspC GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(2027843..2030152) GB:FROM 2027843 GB:TO 2030152 GB:DIRECTION - GB:GENE pspC GB:PRODUCT surface protein PspC GB:NOTE identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05062; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 GB:PROTEIN_ID ACF56456.1 GB:DB_XREF GI:194358008 GB:GENE:GENE pspC LENGTH 769 SQ:AASEQ MFKSNYERKMCYSIRKFSIGVASVAVASLVMGSVVHATENEGTTQAPTSSNRGNESQAEQRRELDLERDKVKKEVREYKEKKVKELYSKSTKSRHKKTVDIVNKLQNINNEYLNKIIQSTSTYEELQKLMMESQSEVDKAVSEFEKDLSSSSSSGSSTEPEASDTAKPNKPTELEKKVAEAQQKVEEAEKKAKDQKEEDYRNYPTITYKTLELEIAEFDVKVKEAELELVKVKAKESRDEKKIKQAEAEVESKQAEATRLKKIKTDRKKAEEEAKLKEAVEKNAATSEQGKPKRRVKRGALGEQATPDKKDYFEKDFRPAFNKNQQMVAIQESLNKLDGETKTVPDGAKLTGEAGNAYNEVRDYAIKVVSENKKLLSQTAVTMDELAMQLTKLNDAMSKLREAKAKLVPEVKPQPENPEHQRPTTPAPDTKPIPQPEGKKPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVALIKELDEFKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPDNKKPSAPKPGMQPSPQPEGKKPSVPAQPGTEDKKPSAPKPGMQPSPQPEGKKPSVPAQPGTEDKKPSAPKPDMQPSPQPEGKKPSVPAQPGTEDKKPSAPKPGMQPSPQPEGKKPSVPAQPGTEDKKPSAPKPDMQPSPQPEGKKPSVPAQPGTEDKKPSAPKPDMQPSPQPEGKKPSVPEINQEKEKAKLAVATEKKLPSTGVASNLVLEIIGLLGLIGTSFIAMKRRK GT:EXON 1|1-769:0| BL:SWS:NREP 2 BL:SWS:REP 1->39,431->673,703->769|BAG_STRAG|1e-35|46.0|321/1164| BL:SWS:REP 207->411|CD158_MOUSE|1e-04|21.8|188/1109| COIL:NAA 89 COIL:NSEG 2 COIL:REGION 172->201| COIL:REGION 221->279| NREPEAT 3 REPEAT 8|430->444|531->546|550->564|581->595|612->626|643->657|674->688|705->719| REPEAT 5|565->580|596->611|627->642|658->673|689->704| REPEAT 2|445->459|720->734| SEG 66->90|lerdkvkkevreykekkvkelysks| SEG 142->163|sefekdlssssssgsstepeas| SEG 175->199|ekkvaeaqqkveeaekkakdqkeed| SEG 268->285|kkaeeeaklkeaveknaa| SEG 751->759|iigllglig| BL:PDB:NREP 1 BL:PDB:REP 201->265|1w9rA|7e-05|38.5|65/119| RP:PDB:NREP 1 RP:PDB:REP 531->719|2btvA|1e-11|6.7|180/845| RP:PFM:NREP 2 RP:PFM:REP 449->528|PF05062|7e-08|48.1|77/79|RICH| RP:PFM:REP 548->716|PF09770|5e-08|24.6|167/612|PAT1| HM:PFM:NREP 5 HM:PFM:REP 65->146|PF05062|3e-24|34.1|82/82|RICH| HM:PFM:REP 447->528|PF05062|3e-28|45.7|81/82|RICH| HM:PFM:REP 7->32|PF04650|3e-13|53.8|26/27|YSIRK_signal| HM:PFM:REP 734->768|PF00746|2.1e-09|45.7|35/39|Gram_pos_anchor| HM:PFM:REP 361->412|PF08822|3.7e-05|21.2|52/165|DUF1804| RP:SCP:NREP 1 RP:SCP:REP 543->711|1lp3A|8e-09|8.3|169/519|b.121.5.2| OP:NHOMO 252 OP:NHOMOORG 100 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------1--------------------------1-------------------------------------------------11--------------1--------------1--------11111211111--------------11---111-----------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------11--------1---------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------1-1--1---------------------------------------------------------------------------------------------------1------------1------------------------------ ----------1-1-----1----1-1----1-----2----------------1-----------1------------1------1---------------1--2-----6--7-143-2222-62-738W71653111342141-211221-63111O142--11152-1--7------1-------4-------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 44.1 SQ:SECSTR ########################################################################################################################################################################################################HcTTTTccccHHHHHHHHHHHHHHHHHHHHHHHHTTTccTHHHHHHHHHHHHHHHHHHHHHHHHH#################################################################################################################################################################################################################HHHTcEEEEEEEGGGTcTTcccEEEEEEEcccEEEEEEEHHHHcTTcccEEEEEEcHHHHHHTTccTTTTccccEEEEEEEccccccccGGGGGccTTcccccccccccGGGEEEEcHHHHHHHHHTTcHHHHHHHHHHTccEEccccEEcccccEEEEEEEcccccHHHHccccEEEEEEccTTTcEEEEEEccEEEEEEEcccccTTccTGGGccccEEEcccEEEEEEccEcccccEEEccTHHHHHHTTccGGGccHHHHHHHHHHHHHH##################### DISOP:02AL 1-6,38-84,115-193,227-749| PSIPRED ccccccccEEEEEEEEEcHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccc //