[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptococcus pneumoniae G54 (spne4)
Gene : recJ
DDBJ      :recJ         single-stranded-DNA-specific exonuclease RecJ
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  791/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.107.1
:740 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   80->406 1ir6A PDBj 7e-41 35.0 %
:RPS:PDB   26->110 2b0tA PDBj 6e-20 7.5 %
:RPS:PDB   84->364 2eb0A PDBj 4e-42 13.4 %
:RPS:PDB   607->736 2e52A PDBj 2e-17 15.1 %
:RPS:SCOP  63->437 1ir6A  c.107.1.2 * 2e-63 30.6 %
:HMM:SCOP  58->450 1ir6A_ c.107.1.2 * 1.2e-115 47.8 %
:RPS:PFM   88->167 PF02698 * DUF218 5e-05 30.4 %
:RPS:PFM   372->398 PF02272 * DHHA1 3e-04 59.3 %
:RPS:PFM   593->736 PF10141 * ssDNA-exonuc_C 2e-34 50.0 %
:HMM:PFM   590->736 PF10141 * ssDNA-exonuc_C 8.4e-59 44.2 147/195  
:HMM:PFM   78->229 PF01368 * DHH 7.2e-20 20.0 110/117  
:HMM:PFM   371->432 PF02272 * DHHA1 1.1e-13 37.1 62/68  
:HMM:PFM   328->398 PF03853 * YjeF_N 0.0001 33.3 69/173  
:HMM:PFM   44->88 PF00782 * DSPc 0.00024 25.0 44/133  
:BLT:SWISS 1->736 RECJ_BACSU e-123 37.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF56831.1 GT:GENE recJ GT:PRODUCT single-stranded-DNA-specific exonuclease RecJ GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION 539029..541251 GB:FROM 539029 GB:TO 541251 GB:DIRECTION + GB:GENE recJ GB:PRODUCT single-stranded-DNA-specific exonuclease RecJ GB:NOTE identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 GB:PROTEIN_ID ACF56831.1 GB:DB_XREF GI:194358383 GB:GENE:GENE recJ LENGTH 740 SQ:AASEQ MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHDAYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPHRDLFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKNIPEDITQLKTIFQEQHFSAVYFKNDIDKTYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKDQEMMALGTVQEIYDFLMEKE GT:EXON 1|1-740:0| BL:SWS:NREP 1 BL:SWS:REP 1->736|RECJ_BACSU|e-123|37.9|733/786| SEG 208->225|lacalleevqvelldlva| SEG 407->416|afgghagaag| SEG 448->462|lnldeeldlealsle| BL:PDB:NREP 1 BL:PDB:REP 80->406|1ir6A|7e-41|35.0|314/385| RP:PDB:NREP 3 RP:PDB:REP 26->110|2b0tA|6e-20|7.5|80/735| RP:PDB:REP 84->364|2eb0A|4e-42|13.4|277/304| RP:PDB:REP 607->736|2e52A|2e-17|15.1|126/299| RP:PFM:NREP 3 RP:PFM:REP 88->167|PF02698|5e-05|30.4|79/150|DUF218| RP:PFM:REP 372->398|PF02272|3e-04|59.3|27/67|DHHA1| RP:PFM:REP 593->736|PF10141|2e-34|50.0|144/196|ssDNA-exonuc_C| HM:PFM:NREP 5 HM:PFM:REP 590->736|PF10141|8.4e-59|44.2|147/195|ssDNA-exonuc_C| HM:PFM:REP 78->229|PF01368|7.2e-20|20.0|110/117|DHH| HM:PFM:REP 371->432|PF02272|1.1e-13|37.1|62/68|DHHA1| HM:PFM:REP 328->398|PF03853|0.0001|33.3|69/173|YjeF_N| HM:PFM:REP 44->88|PF00782|0.00024|25.0|44/133|DSPc| GO:PFM:NREP 1 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF02272|IPR003156| RP:SCP:NREP 1 RP:SCP:REP 63->437|1ir6A|2e-63|30.6|363/385|c.107.1.2| HM:SCP:REP 58->450|1ir6A_|1.2e-115|47.8|381/0|c.107.1.2|1/1|DHH phosphoesterases| OP:NHOMO 844 OP:NHOMOORG 794 OP:PATTERN -------------------------------------------------------------------- 111-----11--------------------------------------------------------------------11111111111111-1111--111111111111111111111111111111111111111111111112222222222211111121212222-111---1-11-1111111-11111111131111311211111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111132222222222211222222122111111111111111111121-22111111111111111111111111111111111111-11112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111211111111111111111111111111-11111------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111--11111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--------------------------1111111111-11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----1----------1------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 531 STR:RPRED 71.8 SQ:SECSTR ##cHHHHHHHHHHHHHHTTcTTTcEHHHHHHHHHHHHHHHHHHcHHHHEcccHHHHHTTHHHcccccHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHTcEEEEcccccHHHHHHHHHHTccccEEEccccTTcEEEEEccccGGGccTTGGGHHcEEEEEEEccccccccccccEEEEcccccHHHHHHHHHHTTcGGGHGTcccccccHHHHHHHHHHHHHHHTTTcHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHGGGGccHHHHTTcEEEEEETTEEEEEEEEEEccTHHHHHHHHHHHHHHHHHHHHTTccEEEEEEEETTTTEEcHHHHHHHcccccEEEETTcccHHHGGcTTccEEEEEEEcccEEEEEEEcccccHHHHHHTTGGGcc########################################################################################################################################################################################################HHHHHHHHTTTc##cHHHHHHHHHHHHHTccHHHHHHHHHHHTEEcTTHccTTcHHHHHHHHHHHHHHHHHHccTTcccEEEEcccccEEEEEEccEETTcccccHHHHHHTT#TccEEEEEEcGGGccc#### DISOP:02AL 1-3,740-741| PSIPRED ccccccccEEccccccHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHccccEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHcccccHHHcEEEEcHHHHHHHHHHHHHHHHHHccHHHcccEEEccEEEcHHHccHHHHHHHHHcccccccccccEEEEcccEEEEEEEEcccccEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEEEEHHcccccEEEEEEEEEEccccEEEEEcccccccccccEEEEEcccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHccEEEEEccEEEEcccHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc //