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Streptococcus pneumoniae G54 (spne4)
Gene : ssb
DDBJ      :ssb          single-strand binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  716/915 : Eukaryota  5/199 : Viruses  18/175   --->[See Alignment]
b.40.4
:131 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->96 1eygD PDBj 2e-16 38.3 %
:RPS:PDB   1->114 2cczA PDBj 1e-25 16.4 %
:RPS:SCOP  3->107 1ue1A  b.40.4.3 * 8e-25 32.7 %
:HMM:SCOP  1->131 1se8A_ b.40.4.3 * 4.4e-40 48.9 %
:RPS:PFM   3->102 PF00436 * SSB 2e-23 55.0 %
:HMM:PFM   3->101 PF00436 * SSB 5e-33 50.5 99/104  
:BLT:SWISS 1->114 SSB2_STRA5 2e-49 78.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF54817.1 GT:GENE ssb GT:PRODUCT single-strand binding protein GT:DATABASE GIB00761CH01 GT:ORG spne4 GB:ACCESSION GIB00761CH01 GB:LOCATION complement(1740426..1740821) GB:FROM 1740426 GB:TO 1740821 GB:DIRECTION - GB:GENE ssb GB:PRODUCT single-strand binding protein GB:NOTE identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 GB:PROTEIN_ID ACF54817.1 GB:DB_XREF GI:194356369 GB:GENE:GENE ssb LENGTH 131 SQ:AASEQ MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF GT:EXON 1|1-131:0| BL:SWS:NREP 1 BL:SWS:REP 1->114|SSB2_STRA5|2e-49|78.1|114/131| SEG 118->129|dladlvleeeel| BL:PDB:NREP 1 BL:PDB:REP 3->96|1eygD|2e-16|38.3|94/112| RP:PDB:NREP 1 RP:PDB:REP 1->114|2cczA|1e-25|16.4|110/121| RP:PFM:NREP 1 RP:PFM:REP 3->102|PF00436|2e-23|55.0|100/104|SSB| HM:PFM:NREP 1 HM:PFM:REP 3->101|PF00436|5e-33|50.5|99/104|SSB| GO:PFM:NREP 1 GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00436|IPR000424| RP:SCP:NREP 1 RP:SCP:REP 3->107|1ue1A|8e-25|32.7|104/113|b.40.4.3| HM:SCP:REP 1->131|1se8A_|4.4e-40|48.9|131/0|b.40.4.3|1/1|Nucleic acid-binding proteins| OP:NHOMO 1062 OP:NHOMOORG 739 OP:PATTERN -------------------------------------------------------------------- 1111------------------------------------------------------------1-------------1221111111121111--1----113211121---------------22222222222322221112-1------11--11111----------1--1111--11-----11121222222222222222221331221222331114223321154333333245543232232611122121112111431111114334223232222222223232321433233322233222222222212132121224354222332232222241121121131111111121111111---112113-11121121111111111111111---------111-111111111111-111111------21-----------11111---1----111111--1111111111111---11111112211111111112211111111131112211331121111211121111111-211111111111111211111111111111112121131111121111111------11111111111111331111111111111111111211111111111-2111111111111111111221121221-2112242111221221221311111222111211121222213311111111111111111111111111111111111111-111121231112221111121111111111111111112111211111111111111111111111111111111---4324111-11-111--------111-112--11-21--1111---11111111-111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2---------1--------------1-----1---- -----------------------------1-----------1---1--------------1-----------------1---11---------------------1-111------------1----11-----111----------------1--------------------- STR:NPRED 114 STR:RPRED 87.0 SQ:SECSTR ccccEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEccTTHHHHHTccTTcEEEEEEcEEccccccccccEEEccEEEEEEEEcccHHHHHHHHHc################# DISOP:02AL 39-40,100-127| PSIPRED ccEEEEEEEEEccccEEEEcccccEEEEEEEEEcccEEccccccccEEEEEEEEccHHHHHHHHcccccEEEEEEEEEEccEEEcccEEEEEEEEEEEEEEcccccccccccccccccccccccccccccc //