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Synechocystis sp. PCC 6803 (syne0)
Gene : slr1409
DDBJ      :slr1409      beta transducin-like protein
Swiss-Prot:Y1409_SYNY3  RecName: Full=Uncharacterized WD repeat-containing protein slr1409;

Homologs  Archaea  3/68 : Bacteria  86/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
b.69.4b.70.1
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   37->281 2o9kC PDBj 6e-19 27.8 %
:RPS:PDB   38->94 2dg1C PDBj 6e-05 14.0 %
:RPS:PDB   76->281 2ce9D PDBj 3e-34 17.6 %
:RPS:PDB   252->324 2dg0A PDBj 1e-10 15.2 %
:RPS:SCOP  43->311 1g72A  b.70.1.1 * 3e-32 11.3 %
:HMM:SCOP  37->325 1erjA_ b.69.4.1 * 1.8e-63 34.8 %
:RPS:PFM   114->278 PF04841 * Vps16_N 3e-04 26.4 %
:HMM:PFM   43->76 PF00400 * WD40 4.2e-06 29.4 34/39  
:HMM:PFM   97->118 PF00400 * WD40 7.1e-07 45.5 22/39  
:HMM:PFM   127->158 PF00400 * WD40 7e-07 28.1 32/39  
:HMM:PFM   206->240 PF00400 * WD40 2.5e-06 22.9 35/39  
:HMM:PFM   254->281 PF00400 * WD40 2.5e-10 50.0 28/39  
:HMM:PFM   298->322 PF00400 * WD40 0.00059 44.0 25/39  
:HMM:PFM   154->192 PF04762 * IKI3 0.00056 34.2 38/928  
:BLT:SWISS 1->326 Y1409_SYNY3 0.0 100.0 %
:PROS 105->119|PS00678|WD_REPEATS_1
:PROS 227->241|PS00678|WD_REPEATS_1
:REPEAT 6|52->76|94->117|134->158|215->239|257->281|298->320

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAA17638.1 GT:GENE slr1409 GT:PRODUCT beta transducin-like protein GT:DATABASE GIB00004CH01 GT:ORG syne0 GB:ACCESSION GIB00004CH01 GB:LOCATION 1182665..1183645 GB:FROM 1182665 GB:TO 1183645 GB:DIRECTION + GB:GENE slr1409 GB:PRODUCT beta transducin-like protein GB:NOTE ORF_ID:slr1409 GB:PROTEIN_ID BAA17638.1 LENGTH 326 SQ:AASEQ MRIFPVFLLTFSLFLIKEEIVTAEVKVSAPVVNQSGIKLNLERQFTGSDVAINRIHFSPDGQFLLTAAADGVGTLWTKEGEMLGQLQGQKPPMFNARLSPDRQILITTGYDGTIRLWNLQGELLEEQQPHRAAVADAIFSPDSQIIVTCSDDGQTKIFTRQGQEIASVLKSGTARNLAYHPQGLLIASVSDSGSLHLINPNGKIEREISTGQGRINNVNFSPNGEQLLTSGINGSAKLWNLAGELIHEYKVVPTGWVNSAQFYPKGEWLATASDDGTIRFWQKDGQLIYELPLVNARLTSLSFSPDGKQLAATSSQGQVWVFNLSY GT:EXON 1|1-326:0| SW:ID Y1409_SYNY3 SW:DE RecName: Full=Uncharacterized WD repeat-containing protein slr1409; SW:GN OrderedLocusNames=slr1409; SW:KW Complete proteome; Repeat; WD repeat. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->326|Y1409_SYNY3|0.0|100.0|326/326| PROS 105->119|PS00678|WD_REPEATS_1|PDOC00574| PROS 227->241|PS00678|WD_REPEATS_1|PDOC00574| NREPEAT 1 REPEAT 6|52->76|94->117|134->158|215->239|257->281|298->320| BL:PDB:NREP 1 BL:PDB:REP 37->281|2o9kC|6e-19|27.8|241/303| RP:PDB:NREP 3 RP:PDB:REP 38->94|2dg1C|6e-05|14.0|57/320| RP:PDB:REP 76->281|2ce9D|3e-34|17.6|204/332| RP:PDB:REP 252->324|2dg0A|1e-10|15.2|66/317| RP:PFM:NREP 1 RP:PFM:REP 114->278|PF04841|3e-04|26.4|159/391|Vps16_N| HM:PFM:NREP 7 HM:PFM:REP 43->76|PF00400|4.2e-06|29.4|34/39|WD40| HM:PFM:REP 97->118|PF00400|7.1e-07|45.5|22/39|WD40| HM:PFM:REP 127->158|PF00400|7e-07|28.1|32/39|WD40| HM:PFM:REP 206->240|PF00400|2.5e-06|22.9|35/39|WD40| HM:PFM:REP 254->281|PF00400|2.5e-10|50.0|28/39|WD40| HM:PFM:REP 298->322|PF00400|0.00059|44.0|25/39|WD40| HM:PFM:REP 154->192|PF04762|0.00056|34.2|38/928|IKI3| GO:PFM:NREP 2 GO:PFM GO:0005737|"GO:cytoplasm"|PF04841|IPR006926| GO:PFM GO:0006886|"GO:intracellular protein transport"|PF04841|IPR006926| RP:SCP:NREP 1 RP:SCP:REP 43->311|1g72A|3e-32|11.3|266/571|b.70.1.1| HM:SCP:REP 37->325|1erjA_|1.8e-63|34.8|287/0|b.69.4.1|1/1|WD40 repeat-like| OP:NHOMO 3541 OP:NHOMOORG 287 OP:PATTERN --------------------------------------------------321--------------- --1-4----------------1--1------------1---D7C--------------------2-1-431-----------------11---------------12------------------2111211117144426---1-bCG878C11--------262CRNUK1-11------1--1--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------1----------------------11-1111112--------1---1-------------1-----------------1-------------------------------------------------------------------------1------------5------------------1-------------------1----111149-------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------2--------------------------------------------1----------- 2122ACG1D671FHO5A65DEE9DGJ9769A9A7347767557988AICSB6FE586D5678639566453345364553388564CC-JKRAFL*9887A77HMN1DJEaPdNLSQE9I7IQGfR9f9y*e1hYoAB9CRFHVLEKDFCR8BiHYNIMNYRJJLJ7PIMkC9PK4HJA*776B9PGXOBUH76CFGEI ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 94.2 SQ:SECSTR ###################HHHHHHHHHHccTTTccEEEHccEccccccccccEEEEccccTTcEEEEcccccEEcccccEEEEEEEcccccEEEEEEcTTccEEEEEETTccEEEEETTTEEEEEEccccccEEEEEEcTTccEEEEEETTcEEEEEETTTccEEEEEccccEEEEEEcTTccEEEEEETTccEEEEETTcccEEEEccccccEEEEEEcTTccEEEEEETTcEEEEEETTccEEEEEEccEcccEEEEEEcTTccEEEEEETTccEEEEETTccEEEcccccTTcTTcccEEEEEEEcTTcTTcEEEEEEccEc DISOP:02AL 326-327| PSIPRED cccccEEEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcc //