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Thermobifida fusca YX (tfus0)
Gene : AAZ54044.1
DDBJ      :             DNA replication and repair protein RecF
Swiss-Prot:RECF_THEFY   RecName: Full=DNA replication and repair protein recF;

Homologs  Archaea  0/68 : Bacteria  514/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:377 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->295 2o5vA PDBj 8e-25 35.2 %
:RPS:PDB   1->57 1e69A PDBj 3e-07 28.1 %
:RPS:SCOP  1->43 1f2t.1  c.37.1.12 * 5e-12 32.6 %
:HMM:SCOP  1->344 1w1wA_ c.37.1.12 * 3.8e-42 28.9 %
:RPS:PFM   3->160 PF02463 * SMC_N 1e-06 28.0 %
:HMM:PFM   3->351 PF02463 * SMC_N 1.9e-21 25.1 175/220  
:BLT:SWISS 1->377 RECF_THEFY 0.0 100.0 %
:PROS 117->137|PS00617|RECF_1
:PROS 319->337|PS00618|RECF_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54044.1 GT:GENE AAZ54044.1 GT:PRODUCT DNA replication and repair protein RecF GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 4988..6121 GB:FROM 4988 GB:TO 6121 GB:DIRECTION + GB:PRODUCT DNA replication and repair protein RecF GB:PROTEIN_ID AAZ54044.1 GB:DB_XREF GI:71914142 InterPro:IPR001238 LENGTH 377 SQ:AASEQ MHVSHLQLADYRSYEAAYLELEPGVSTFIGPNGQGKTNLVEAIGYVATHSSHRVAHDAPLVRRGAQRAVIRAAVVRHGQTALIELEINPGRANRARLNRSPNTRMRDVLGILHTVLFAPEDLALVKGDPGERRRFLDELLTARAPRYAGVRSDYERVLKQRNALLKSAAAQNLHHRGGRDLPTLDVWDEHLAQIGAELLAARLALVAELQPLAAKAYGELTATQDPISLRYRCSATDEELDTTNRPQLVEILRAALLRARPDELRRGVSLVGPHRDDLQLWLNDLPAKGYASQGESWSYALALRLAGFELLRADGDDPVLLLDDVFAELDAERRRRLASYVRTAEQVLVTAAVPDDVPQELSGARFRVTGGSVERER GT:EXON 1|1-377:0| SW:ID RECF_THEFY SW:DE RecName: Full=DNA replication and repair protein recF; SW:GN Name=recF; OrderedLocusNames=Tfu_0004; SW:KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA repair;DNA replication; DNA-binding; Nucleotide-binding; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->377|RECF_THEFY|0.0|100.0|377/377| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009432|"GO:SOS response"|SOS response| PROS 117->137|PS00617|RECF_1|PDOC00539| PROS 319->337|PS00618|RECF_2|PDOC00539| SEG 61->76|vrrgaqraviraavvr| SEG 196->209|aellaarlalvael| SEG 314->325|dgddpvlllddv| SEG 333->336|rrrr| BL:PDB:NREP 1 BL:PDB:REP 1->295|2o5vA|8e-25|35.2|261/358| RP:PDB:NREP 1 RP:PDB:REP 1->57|1e69A|3e-07|28.1|57/263| RP:PFM:NREP 1 RP:PFM:REP 3->160|PF02463|1e-06|28.0|150/536|SMC_N| HM:PFM:NREP 1 HM:PFM:REP 3->351|PF02463|1.9e-21|25.1|175/220|SMC_N| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 1 RP:SCP:REP 1->43|1f2t.1|5e-12|32.6|43/288|c.37.1.12| HM:SCP:REP 1->344|1w1wA_|3.8e-42|28.9|308/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 517 OP:NHOMOORG 514 OP:PATTERN -------------------------------------------------------------------- ----111111111111112-111111111111111111111111111111111111111111111111111111111111111-----111111111--111111111111111111111----11111111111111111---111111111111111-11-111111111111111111111111122-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--111--------1---1-----------------------------------------1---1-11-1----1-1111------------------------------------------------1--------------------------------------------------------------------------1--------------111111111--1-1------------------------------11-1-----1111111---111--11--1-------1------11--1111111111111-1111111111111111111111--1111111111111111111111111111-111111111111---11111111111----1111111----1--1--------1--1----111--------------------111---------------------------11111111---1-111-11-------------------------1----------11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 262 STR:RPRED 69.5 SQ:SECSTR cEEEEEEEEccTTccccEEEEcccEEEEEccTTTccTHHHHHHHHTcccccTTccccGGGccTTcccEEEEEEEEETTEEEEEEEEEETTEEEEEcGGGccccc#########EEEEcTTTTHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHH##########HTTcGG#GTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT#TccccEEE############EEEccccTTTHHHHHHHTHHHHHHHTcccccGGGcEEEEEETTEEHHHHccHHH################################################################################## DISOP:02AL 374-377| PSIPRED cEEEEEEEEEEEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHccccEEEEEEEEEEcccEEEEEEEEEEcccEEEEEcccccHHHHHHHHHHHHEEEccccHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHHcccEEEEEccEEEEEc //