[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ54057.1
DDBJ      :             cell envelope-related transcriptional attenuator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  37/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:472 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   190->355 PF03816 * LytR_cpsA_psr 3e-12 37.8 %
:HMM:PFM   190->360 PF03816 * LytR_cpsA_psr 9.8e-28 35.2 142/148  
:HMM:PFM   105->153 PF02714 * DUF221 0.001 29.8 47/325  
:BLT:SWISS 174->385 LYAT_BACHD 2e-11 27.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54057.1 GT:GENE AAZ54057.1 GT:PRODUCT cell envelope-related transcriptional attenuator GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(23403..24821) GB:FROM 23403 GB:TO 24821 GB:DIRECTION - GB:PRODUCT cell envelope-related transcriptional attenuator GB:PROTEIN_ID AAZ54057.1 GB:DB_XREF GI:71914155 InterPro:IPR004474 LENGTH 472 SQ:AASEQ MAYPAEGGRRPRFWATARAALWTSASALLPGLAHLRAGKRAAGAGILGGFLLLATAAGAAFYQLRSDLSWQAWLAAQPYWVEAVAIGAVALATLWSSIIIRSWQLTRPRPERWGSRAVGAVLVTVLCTALIVPFAFVVRTAVTLHSTLTSVLAPAEPASQAAADTPWPHRSHINVLLLGGDAGDNRYGLRTDTMIVANIDIDSGDTVLISVPRNLENVPFPEGTALAERYPEPYGFDDLLNEVYQTVAEEPEELAINPDAPDPAADTLKHVIGHALGISIDYYALVDLRGFADLIDAIGGVVVPVEEPIRYGRRGEGLLEPGERRMSGKEALWYSRSRTDSDDYARMGRQGCLLKYVAEQTNPVTVLRRFDELADATQRTLTSDIPPSHLPALVDLARRVSQARMHTLQLSPPQVTTAHPDWTEIRTLVDRAIRSNGEDHGPADTAKQPSPSPDSPGRQIGKKPVSLDRLCP GT:EXON 1|1-472:0| BL:SWS:NREP 1 BL:SWS:REP 174->385|LYAT_BACHD|2e-11|27.5|182/304| TM:NTM 4 TM:REGION 18->38| TM:REGION 41->63| TM:REGION 81->103| TM:REGION 118->140| SEG 41->60|aagagilggflllataagaa| SEG 153->166|apaepasqaaadtp| SEG 258->266|pdapdpaad| SEG 312->325|grrgegllepgerr| RP:PFM:NREP 1 RP:PFM:REP 190->355|PF03816|3e-12|37.8|135/145|LytR_cpsA_psr| HM:PFM:NREP 2 HM:PFM:REP 190->360|PF03816|9.8e-28|35.2|142/148|LytR_cpsA_psr| HM:PFM:REP 105->153|PF02714|0.001|29.8|47/325|DUF221| OP:NHOMO 47 OP:NHOMOORG 38 OP:PATTERN -------------------------------------------------------------------- ---------------------1----------------------1-11-11-111112----21-11-112------------------------------------------------------------------22-----12----------------------------------------------------------------1-------111--11------2-------------------------22---------11-1--------------------------------------------------------------------------------------1--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-7, 100-113, 151-170, 185-186, 439-464| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEcEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccccEEEEEEEEEccccEEEEEEEEHHHEEEEcccccccccccccccccHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHcccEEEcccccccccccccccccccEEEEcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHcccccEEEEEEEcccEEccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccHHcccc //