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Thermobifida fusca YX (tfus0)
Gene : AAZ54071.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  102/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:264 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->230 3eetA PDBj 2e-24 36.7 %
:RPS:PDB   3->230 3eetA PDBj 3e-23 34.4 %
:RPS:SCOP  4->75 1e2xA1  a.4.5.6 * 2e-16 25.0 %
:RPS:SCOP  91->230 2pkhA1  d.190.1.2 * 6e-12 15.3 %
:HMM:SCOP  1->86 1v4rA1 a.4.5.6 * 3.3e-17 46.5 %
:HMM:SCOP  91->230 2fa1A1 d.190.1.2 * 8.1e-20 34.3 %
:RPS:PFM   9->69 PF00392 * GntR 3e-09 52.5 %
:HMM:PFM   90->223 PF07702 * UTRA 3e-22 33.6 131/141  
:HMM:PFM   7->69 PF00392 * GntR 1.4e-17 50.8 63/64  
:BLT:SWISS 1->70 MNGR_ECOLI 2e-10 42.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54071.1 GT:GENE AAZ54071.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 38112..38906 GB:FROM 38112 GB:TO 38906 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAZ54071.1 GB:DB_XREF GI:71914169 InterPro:IPR000524 LENGTH 264 SQ:AASEQ MTEKPGYLRVADSLREPILNGELPPGTRLPSRAQLARRHAVSEQVARCALQLLVAEGLIEGRAGSGYYVRAPSAEVLLSRTSHLPGLDPLRTEWLGARTETASIAMARRLGTRVGEPLYRTECLGYAQGTPIALWVAWEPAILTLGTGLTPGERPDTSVAERLAEVGVTVDRIEEEVSVRRLREVEARRLALEPGTAILLVQRTHFAGRRVVETSDLIVSAEHCRLGYRLVSPSRPGRTAADKNGPSPPRSRETAASSQMGSAE GT:EXON 1|1-264:0| BL:SWS:NREP 1 BL:SWS:REP 1->70|MNGR_ECOLI|2e-10|42.9|70/240| SEG 172->193|rieeevsvrrlrevearrlale| BL:PDB:NREP 1 BL:PDB:REP 3->230|3eetA|2e-24|36.7|221/238| RP:PDB:NREP 1 RP:PDB:REP 3->230|3eetA|3e-23|34.4|224/238| RP:PFM:NREP 1 RP:PFM:REP 9->69|PF00392|3e-09|52.5|61/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 90->223|PF07702|3e-22|33.6|131/141|UTRA| HM:PFM:REP 7->69|PF00392|1.4e-17|50.8|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 4->75|1e2xA1|2e-16|25.0|72/73|a.4.5.6| RP:SCP:REP 91->230|2pkhA1|6e-12|15.3|137/141|d.190.1.2| HM:SCP:REP 1->86|1v4rA1|3.3e-17|46.5|86/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 91->230|2fa1A1|8.1e-20|34.3|137/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 118 OP:NHOMOORG 102 OP:PATTERN -------------------------------------------------------------------- 11--11---------------1---------11111-----11---------211-----11-11213621--------------------------------------------------------------------------1----------------------1-------------------------------------------------111--1-------------------------------1-11-1-------111-----111111--------------------------------11---111-----------------------------2-----1-------1----1-----1-----------11----1---1111111111----1------1---11---1--1--22-------1--11-----------------------------------------------------221-------------------------11------11-----1111------------------------2----1---------------1--------------------------------------------------------------------------------111-------------------------------------------------------------111---1---------------------------1----------------------------------------------------------1-------1--------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 87.9 SQ:SECSTR HHcccHHHHHHHHHHHHHHHTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcccEEEccccccEEEccHHHHHcccTTccEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEEETTEEEEEEEEEHHHHTTcTTcTTccTTTTcHHHHHHTTccccEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEETTEEEEEEEEEEETTTEEEEccccc################################ DISOP:02AL 1-2, 78-85, 231-264| PSIPRED cccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHEEEEEEccccHHHHHHHcccccccEEEEEEEEEEccEEEEEEEEcccHHHHcccccccHHHcccHHHHHHHHcccEEEEEEEEEEEEcccHHHHHHHccccccEEEEEEEEEEcccEEEEEEEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccc //