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Thermobifida fusca YX (tfus0)
Gene : AAZ54138.1
DDBJ      :             RNA binding S1:Resolvase, RNase H-like fold
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  592/915 : Eukaryota  140/199 : Viruses  0/175   --->[See Alignment]
a.294.1a.60.2b.40.4c.55.3
:777 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->724 2oceA PDBj 0.0 58.7 %
:RPS:PDB   4->725 3bzkA PDBj e-133 58.9 %
:RPS:SCOP  4->321 2oceA3  a.294.1.1 * 4e-99 52.8 %
:RPS:SCOP  322->470 2oceA5  c.55.3.13 * 3e-34 69.1 %
:RPS:SCOP  471->560 2oceA1  a.60.2.6 * 5e-21 73.3 %
:RPS:SCOP  561->633 2oceA2  a.60.2.6 * 1e-27 68.5 %
:RPS:SCOP  623->701 1jjgA  b.40.4.5 * 1e-08 7.6 %
:HMM:SCOP  631->727 1wi5A_ b.40.4.5 * 1.1e-26 39.2 %
:RPS:PFM   9->201 PF09371 * Tex_N 2e-52 64.2 %
:HMM:PFM   9->199 PF09371 * Tex_N 5.4e-82 60.2 191/193  
:HMM:PFM   649->721 PF00575 * S1 2.6e-23 47.9 73/74  
:HMM:PFM   495->544 PF03934 * GspK 8.1e-06 28.6 49/280  
:HMM:PFM   326->354 PF04312 * DUF460 0.00057 40.7 27/138  
:BLT:SWISS 1->725 YHGF_ECOLI 0.0 59.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54138.1 GT:GENE AAZ54138.1 GT:PRODUCT RNA binding S1:Resolvase, RNase H-like fold GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 121094..123427 GB:FROM 121094 GB:TO 123427 GB:DIRECTION + GB:PRODUCT RNA binding S1:Resolvase, RNase H-like fold GB:PROTEIN_ID AAZ54138.1 GB:DB_XREF GI:71914236 InterPro:IPR003029 InterPro:IPR006641 LENGTH 777 SQ:AASEQ MTTSIHQRIAEELGVRERQVRAAVELLDDGATVPFIARYRKEVTEMLDDAQLRAIEERLRYLRELEERRTVILESIKAQGKLTPELEAAIMAADSKARLEDIYLPYKPKRRTKAQIAREAGLEPLADALLNDPSRDPHDQAAAYVDADKGVADTAAALEGARAILVERFTEDADLIGELRERMWQRGRLVSRVREGKEEVGVKFADYFDFAEAFTTLPSHRVLALFRGEKEEVLDLTLEPEEPAEDPRARSSYEVRIAQHFGIADQGRPGDRWLLDTVRWAWRTRILVRLDIDLRSRLWQEAEDEAVRVFAANLRDLLLAAPAGTRPTIGLDPGLRTGVKVAVVDGTGKVVDTATIYPHEPQKRWDESIAVLAALAQKHRVELVAIGNGTASRETDRLAADLIKRHPELKLTKVMVSEAGASVYSASAYASQELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSEVKLSRSLDAVVEDCVNAVGVDVNTASVPLLSRVSGITASLAQNIVAYRDANGPFRTRAQLREVPRLGPKAFEQCAGFLRIPDGDDPLDSSSVHPEAYPVVRRILEATGRDIRALIGDTDTLRSLRPDDFVDERFGLPTVTDILAELEKPGRDPRPEFQTAAFRDGVEDITDLEPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDVVKPGDIVRVKVLDVDVRRKRISLTLRLDDEVDQRSGENNRSGGERRERGAPRRGDQRRQRGGRGEQQPMGAMAEALRRAGLV GT:EXON 1|1-777:0| BL:SWS:NREP 1 BL:SWS:REP 1->725|YHGF_ECOLI|0.0|59.5|723/773| SEG 56->69|eerlrylreleerr| SEG 239->250|epeepaedprar| SEG 416->431|vseagasvysasayas| SEG 662->681|vaafgafvdvgvhhdglvhv| SEG 702->715|vrvkvldvdvrrkr| SEG 729->763|rsgennrsggerrergaprrgdqrrqrggrgeqqp| BL:PDB:NREP 1 BL:PDB:REP 4->724|2oceA|0.0|58.7|719/729| RP:PDB:NREP 1 RP:PDB:REP 4->725|3bzkA|e-133|58.9|718/728| RP:PFM:NREP 1 RP:PFM:REP 9->201|PF09371|2e-52|64.2|193/193|Tex_N| HM:PFM:NREP 4 HM:PFM:REP 9->199|PF09371|5.4e-82|60.2|191/193|Tex_N| HM:PFM:REP 649->721|PF00575|2.6e-23|47.9|73/74|S1| HM:PFM:REP 495->544|PF03934|8.1e-06|28.6|49/280|GspK| HM:PFM:REP 326->354|PF04312|0.00057|40.7|27/138|DUF460| RP:SCP:NREP 5 RP:SCP:REP 4->321|2oceA3|4e-99|52.8|316/323|a.294.1.1| RP:SCP:REP 322->470|2oceA5|3e-34|69.1|149/149|c.55.3.13| RP:SCP:REP 471->560|2oceA1|5e-21|73.3|90/90|a.60.2.6| RP:SCP:REP 561->633|2oceA2|1e-27|68.5|73/73|a.60.2.6| RP:SCP:REP 623->701|1jjgA|1e-08|7.6|79/102|b.40.4.5| HM:SCP:REP 631->727|1wi5A_|1.1e-26|39.2|97/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 832 OP:NHOMOORG 739 OP:PATTERN --------------------------------11----11111------------------------- 1-1-11111111111------1--11-----111111111-111--------111-----11--1111111---------1-------2111-1-----1111--111-1--------------1---------1---------11111111--------------1111----------------------11111111111111111111111111111111111111111111111111111111111111-1-11-1---11111111111-1111111111111111111111111111111111111111111---1-1111111111111111111111111111111-1111--11--11---111-2---------111111--11111--11--1-111-1111111111--1111111111111111---11111-11-------------11------------------------------------111111111111111111111111111111111-1111111111111111111---1111111111111111111-111-11111-111111111----11-11-------------------1---1--111111111111111111111111111111--1111-------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11111111111111111111111111121111111111111111111111111----------1111111111111111111111111111--1---------------111------11--1----------1111-1111------1- --------211---111111111111111111111111111111111111111111111111-1------1-1-----------1-1---111--------1-111-12-32323112211222422412B212132211212221221221121223212113262312B4131---19111--1---1--1-1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 722 STR:RPRED 92.9 SQ:SECSTR ###HHHHHHHHHHHTcTTcccHHHHHHHHTccHHHHHHHcHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcccHHHHHHHHGGGccccccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTccGGGTcccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHcEEEEEEcTTcTTTTGGGGGGTEEEEEGGGccHHHHHHHHHHHHTTcEEEEEEccccccccHcccHHHHHHHHHTTccccccTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEcccTTcEEEEEEcTTccEEEEEEEcccTTTccHHHHHHHHHHHHHHTTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccTTHHHHHTcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHTTcTTccHHHHHHHHHHHHHHccccccGGGGGcTTccHHHHHHHHTTEEcTTcccGGGGccccGGGHHHHHHHHHHTTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccHHHHHHTcccGGGccTTcEEEEEEEEEETTEEEEEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTcc#################################################### DISOP:02AL 1-3, 196-198, 475-476, 719-770| PSIPRED ccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHccccEEEccccccccccHHHHHHHHHHHHHccHHcccEEEccccHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHEEcccccccccccccccccHHHHHHHHHccccHHHHccccHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEcccccEEEEHHHHcccccccHHHHcccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccc //