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Thermobifida fusca YX (tfus0)
Gene : AAZ54147.1
DDBJ      :             PASTA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  829/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.11.1d.2.1e.3.1
:801 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   59->621 3dwkB PDBj 1e-42 31.7 %
:RPS:PDB   53->695 3dwkC PDBj 8e-87 25.4 %
:RPS:SCOP  47->274 2oluA1  d.2.1.10 * 7e-61 35.2 %
:RPS:SCOP  280->672 2c5wB1  e.3.1.1 * 5e-52 23.8 %
:RPS:SCOP  703->764 1k25A1  d.11.1.1 * 1e-09 14.5 %
:HMM:SCOP  229->666 2bg1A1 e.3.1.1 * 1.6e-89 37.6 %
:RPS:PFM   66->248 PF00912 * Transgly 2e-40 50.6 %
:RPS:PFM   347->622 PF00905 * Transpeptidase 1e-21 39.9 %
:RPS:PFM   702->763 PF03793 * PASTA 2e-07 36.1 %
:HMM:PFM   65->248 PF00912 * Transgly 2.9e-63 52.0 173/178  
:HMM:PFM   350->621 PF00905 * Transpeptidase 1.9e-39 32.7 254/304  
:HMM:PFM   703->763 PF03793 * PASTA 5.1e-13 36.7 60/63  
:BLT:SWISS 57->629 PBPF_BACSU 2e-55 32.9 %
:BLT:SWISS 703->768 PKN2_CLOAB 2e-06 35.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54147.1 GT:GENE AAZ54147.1 GT:PRODUCT PASTA GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(132370..134775) GB:FROM 132370 GB:TO 134775 GB:DIRECTION - GB:PRODUCT PASTA GB:PROTEIN_ID AAZ54147.1 GB:DB_XREF GI:71914245 InterPro:IPR001264 InterPro:IPR005543 LENGTH 801 SQ:AASEQ MLQKLGQLFGVSVAAGVLVAALAAPALGGIGIAARNVATGFLNMPSELETPPPPQRSIIYDAEGGVIAEVYDRNRELVELDQIAPIMQQAIIAIEDSRFYEHGGLDIVGTFRAALRTIAGRTQGGSSITQQYVKNVLIESATSQAEQEEARETTLGRKIRELRYAIALEQRMTKDEILEGYLNIAYFGDGAYGAESAAQHFFSVSASELNLNQAATLAGLVRYPELYNPRLNPDQAQERRDVVLDRMVATGVITEEEAEKTKAQDLELDISTPSNGCMPSKQPFFCDYVIQEIEKNEAFGETETERARWLRTAGLEIYTTLDPDMQEAGQKAVDKWVPRKNEARKVAAEVLIEPGTGEIRAMVQSRNYGPDESKLGETSINFTANADRGGSTGFQAGSTFKAITLAAALEKGLPYSTSFTSGSTITVTGQKNCDGNTLAPWTVSNSSESGGAATHNMVSGTKGSVNTYFAQLQKRVGLCNVIKMAEKLGLTRADGQSYDNPRTQGNNSFTLGSEEVSPLNVAAAYATFASRGIYCKPMAITKIVDRQAGRTIEMEPECERRISKDVADGVNYLLQQTFKGGTATGLGIGRPAAGKTGTTDNSASAWFAGYTPNLAGAVFVGDPRGPNQYPLRNVTLGGRYYSVVYGATIPGPIWQETMREAVKKLDEKSFARSPARFGSTSEPAPPRREDPTDANPASSPGSVPNVVGMSRDQAVAAIESAGYRANVADRRLPSSHPEGTVALVEPSAGSRLAEGSVVNIFLSRGPADNGNSNGGNGNGGWEFPGGGGWELPALDDQWGAF GT:EXON 1|1-801:0| BL:SWS:NREP 2 BL:SWS:REP 57->629|PBPF_BACSU|2e-55|32.9|516/714| BL:SWS:REP 703->768|PKN2_CLOAB|2e-06|35.4|65/657| TM:NTM 1 TM:REGION 10->32| SEG 13->34|vaagvlvaalaapalggigiaa| SEG 82->94|qiapimqqaiiai| SEG 139->154|esatsqaeqeearett| SEG 769->788|ngnsnggngnggwefpgggg| BL:PDB:NREP 1 BL:PDB:REP 59->621|3dwkB|1e-42|31.7|515/621| RP:PDB:NREP 1 RP:PDB:REP 53->695|3dwkC|8e-87|25.4|594/623| RP:PFM:NREP 3 RP:PFM:REP 66->248|PF00912|2e-40|50.6|172/178|Transgly| RP:PFM:REP 347->622|PF00905|1e-21|39.9|253/289|Transpeptidase| RP:PFM:REP 702->763|PF03793|2e-07|36.1|61/63|PASTA| HM:PFM:NREP 3 HM:PFM:REP 65->248|PF00912|2.9e-63|52.0|173/178|Transgly| HM:PFM:REP 350->621|PF00905|1.9e-39|32.7|254/304|Transpeptidase| HM:PFM:REP 703->763|PF03793|5.1e-13|36.7|60/63|PASTA| GO:PFM:NREP 6 GO:PFM GO:0003824|"GO:catalytic activity"|PF00912|IPR001264| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF00912|IPR001264| GO:PFM GO:0009274|"GO:peptidoglycan-based cell wall"|PF00912|IPR001264| GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| GO:PFM GO:0008658|"GO:penicillin binding"|PF03793|IPR005543| RP:SCP:NREP 3 RP:SCP:REP 47->274|2oluA1|7e-61|35.2|199/208|d.2.1.10| RP:SCP:REP 280->672|2c5wB1|5e-52|23.8|353/385|e.3.1.1| RP:SCP:REP 703->764|1k25A1|1e-09|14.5|55/61|d.11.1.1| HM:SCP:REP 229->666|2bg1A1|1.6e-89|37.6|356/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 2594 OP:NHOMOORG 837 OP:PATTERN -------------------------------------------------------------------- 223-432322233333322-24223422222344445366344432324335252212226533535876432333331241311111332214111--23133235314---------------2222212221222233---226433444223312122254225693111-11111111232111126368888898878888888755558894545633222222653333333333333333444332235533323332244332332433333333333333333333333444444444444443333333333426322222323334233134453521432314445333622555311145-666422222544544345354444444444445-6666877665414554556565673435434342442351111111111112334------------1222112111111----1423434444456666544444554444442554456771122233333343431334222222221111122222443432132112222134334453333336344121121111121211111111111111433243322234333333233333333332--11213-1-11143323424444444444-4444444444444344444444334443433343334333332443332343133444344444411131111122223431322233313332222423333333333233333334422323443---------13223222223332244444443333333--136666661111111111--------------------------1-21111122--3 -------------1-----------------------------------------------------------------------------------------------------------------------------------------------------1--------------11-----1--4--1--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 643 STR:RPRED 80.3 SQ:SECSTR ####################################################ccccEEEEcTTccEEEEEcccccccccGGGccHHHHHHHHHHHcGGGTTcccccHHHHHHTTTTTTTccccccccHHHHHHHHHcccccccHH#########ccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccTTcccHHHHHHHHTccccTTccHHHHHHHHHGGGcHHHHcTTTcHHHHHHHHHHHHHHHHHTTcccHHHHHHHTTcccGGGcccccTcccccTTGGGHHHHHHHHHHHTTccTTccccHHHHTTcTcEEEEcccHHHHHHHHHHHHHccccccTTEEEEEEEEEETTTccEEEEEccTTccTTcTTcTTccEEcGGTcccTTTccEEcGGGGHHHTHHHHHHHccHTHHHccTTcEEEcccccccccccccccccccTTccccccEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTcccGGccccccHHHHTTcTTcEEcHHHHHHHHHHHTTTcEEEccccEEEEEccccccEEEccccEEEcccHHHHHHHHHHHHTTccTTcTTccccccccEEEEEETTEEEEEEEEEEcccEEEEEEEEEccccccccccccGGGTTcEEHHHHHTHHHHHHHHHHHHHHcccccccccccTTEEEETTEEEETTccccccccccEEEEEEc################################################################################################# DISOP:02AL 704-718, 733-753| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccEEEEEccccEEEEEcccccEEccHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcEEEccccccHHHHHHHHHHcccHHHccHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEccccccccccccccHHHHHHccccHHccccccccHHHHHHHHHHHHHccccccccccccEEEEccEEEccccccccccEEEcccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccEEEEEEccEEEEEEEEEccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccEEcccccccEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccHHHcccc //