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Thermobifida fusca YX (tfus0)
Gene : AAZ54156.1
DDBJ      :             endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  871/915 : Eukaryota  158/199 : Viruses  0/175   --->[See Alignment]
a.96.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->235 1p59A PDBj 5e-52 52.1 %
:RPS:PDB   36->243 2abkA PDBj 2e-47 38.5 %
:RPS:SCOP  36->238 1ornA  a.96.1.1 * 3e-65 49.8 %
:HMM:SCOP  32->244 1ornA_ a.96.1.1 * 5.1e-68 43.7 %
:RPS:PFM   100->198 PF00730 * HhH-GPD 4e-13 43.4 %
:HMM:PFM   66->201 PF00730 * HhH-GPD 1.9e-22 37.9 103/121  
:HMM:PFM   219->235 PF10576 * EndIII_4Fe-2S 4.3e-07 58.8 17/17  
:BLT:SWISS 27->256 END3_MYCTU 9e-79 61.6 %
:PROS 219->235|PS00764|ENDONUCLEASE_III_1
:PROS 134->163|PS01155|ENDONUCLEASE_III_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54156.1 GT:GENE AAZ54156.1 GT:PRODUCT endonuclease III / DNA-(apurinic or apyrimidinic site) lyase GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 141677..142453 GB:FROM 141677 GB:TO 142453 GB:DIRECTION + GB:PRODUCT endonuclease III / DNA-(apurinic or apyrimidinic site) lyase GB:PROTEIN_ID AAZ54156.1 GB:DB_XREF GI:71914254 InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036 InterPro:IPR005759 LENGTH 258 SQ:AASEQ MSRNVYTASSSPGASGDASAAERDTPTGETRLALMRRSRQINRELARMYPDAHCELDFTTPLELLVATILSAQCTDRRVNKVTPVLFARYRSAADYASANQEELENIIRSTGFYRTKARNIIALGQRLCDEHGGEVPDRLEDLVKLPGVGRKTANVVLGNAFGVPGLTVDTHFGRLVRRFGMTRQTDPVKVEQEIAALFPPEEWTMLSHRLIWHGRRVCHARRPACGACELQHLCPSYGEGPVDEETARRLVRTGPFS GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 27->256|END3_MYCTU|9e-79|61.6|229/245| PROS 219->235|PS00764|ENDONUCLEASE_III_1|PDOC00615| PROS 134->163|PS01155|ENDONUCLEASE_III_2|PDOC00615| SEG 8->21|assspgasgdasaa| SEG 88->99|aryrsaadyasa| BL:PDB:NREP 1 BL:PDB:REP 44->235|1p59A|5e-52|52.1|192/214| RP:PDB:NREP 1 RP:PDB:REP 36->243|2abkA|2e-47|38.5|208/211| RP:PFM:NREP 1 RP:PFM:REP 100->198|PF00730|4e-13|43.4|99/144|HhH-GPD| HM:PFM:NREP 2 HM:PFM:REP 66->201|PF00730|1.9e-22|37.9|103/121|HhH-GPD| HM:PFM:REP 219->235|PF10576|4.3e-07|58.8|17/17|EndIII_4Fe-2S| GO:PFM:NREP 1 GO:PFM GO:0006284|"GO:base-excision repair"|PF00730|IPR003265| RP:SCP:NREP 1 RP:SCP:REP 36->238|1ornA|3e-65|49.8|203/214|a.96.1.1| HM:SCP:REP 32->244|1ornA_|5.1e-68|43.7|213/214|a.96.1.1|1/1|DNA-glycosylase| OP:NHOMO 1430 OP:NHOMOORG 1097 OP:PATTERN 22111111111111111111112132242122112111111111111112222111111111111111 1111122222211121111-111111111111122211111111111111--111211--1112111111211111111111122222111111111--11211211111222222221111111111111111213222111121213122133111111111122111111111111111111211111221222221221222112111111222222221111111121111111111111111211112111111-11111111111----2111111111111111111111111111111111111111111111111111111111111111111111311113111-11111111121111211111122112222111221111121122222222221-3323312311222221111222112111222121211121111111111111111111111111111111111111111111111211111111211111111111111111111111111111112222111111112221132211111111111211212211222111111111111113111124321111111111111111111111113122221212122212211112111111122121--1212212-11112222112222222222-222212222222222222122222222111111111111111112222222111111111111111111111112222222212222221222122221-11111111221111211122222111211111111121111222222222222211112221111111111111111111111111-------------------------1111111111211 11-1131-3111111111-1111111-1111111111------11111111111-11-111111111--12111122-2211111111-1-11112111111111111311-11112--111111111-171--1-----11111-1---1--1111-111112111111-1121212292321-2--1-31-131221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 235 STR:RPRED 91.1 SQ:SECSTR #######################HHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHTTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHcTTccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccGGGTTTHHHHHHHHHHHTcccccccGGGcTTGGGcccTTccccGGcccccccEEEEEE DISOP:02AL 1-2, 8-33, 241-258| PSIPRED ccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHccccccEEcHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccc //