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Thermobifida fusca YX (tfus0)
Gene : AAZ54191.1
DDBJ      :             pectate lyase/Amb allergen
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  51/915 : Eukaryota  36/199 : Viruses  0/175   --->[See Alignment]
b.80.1
:449 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->448 1vblA PDBj e-109 46.8 %
:RPS:PDB   40->448 2bspA PDBj 3e-47 44.1 %
:RPS:SCOP  69->448 1jrgA  b.80.1.1 * 9e-62 36.1 %
:HMM:SCOP  38->449 1bn8A_ b.80.1.1 * 9.3e-84 30.4 %
:RPS:PFM   159->366 PF00544 * Pec_lyase_C 4e-40 51.7 %
:HMM:PFM   159->366 PF00544 * Pec_lyase_C 6.8e-54 38.4 185/201  
:BLT:SWISS 68->448 PEL_BACSU 2e-89 44.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54191.1 GT:GENE AAZ54191.1 GT:PRODUCT pectate lyase/Amb allergen GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 177500..178849 GB:FROM 177500 GB:TO 178849 GB:DIRECTION + GB:PRODUCT pectate lyase/Amb allergen GB:PROTEIN_ID AAZ54191.1 GB:DB_XREF GI:71914289 InterPro:IPR002022 LENGTH 449 SQ:AASEQ MRRAATLGVALALPLTLAAPSSALAQPHHHAGVSPKAEQVAREVLAPNDGWAAYDGGTTGGAAADPEHVYVVTTYAELREALAGGRTNDTPKIVFLKGRIDANTDEHGNQLTCDDYADPEYDFDAYLATYDPEVWGWDQEPSGPLEEARERSYRNQRDQVVIEVGSNTTLIGLGDDATLVGAQVMVDSVDNVIIRNIIFETAQDCFPQWDPTDGPEGNWNSEFDGVSVRRSTHVWIDHNEFSDGAVLDRDLPEYFGREFQVHDGLLDITHGADLVTVSYNVLRDHDKTMLIGSTDSPTYDVGKLRVTLHHNRWENVLQRAPRVRYGQVHVYNNHYVIPATPEGEKTYEYSWGVGVESALYAENNYFDIDPSVDFSQVVAHWKGTQMYEKGSYANGRSRHHQVSFLDEYNAVHSPTIENKQTWSPPLHGRIDPTQSVPAKVQKAGVGHIL GT:EXON 1|1-449:0| BL:SWS:NREP 1 BL:SWS:REP 68->448|PEL_BACSU|2e-89|44.3|366/420| SEG 4->25|aatlgvalalpltlaapssala| SEG 49->65|dgwaaydggttggaaad| BL:PDB:NREP 1 BL:PDB:REP 38->448|1vblA|e-109|46.8|408/416| RP:PDB:NREP 1 RP:PDB:REP 40->448|2bspA|3e-47|44.1|395/399| RP:PFM:NREP 1 RP:PFM:REP 159->366|PF00544|4e-40|51.7|172/187|Pec_lyase_C| HM:PFM:NREP 1 HM:PFM:REP 159->366|PF00544|6.8e-54|38.4|185/201|Pec_lyase_C| RP:SCP:NREP 1 RP:SCP:REP 69->448|1jrgA|9e-62|36.1|313/354|b.80.1.1| HM:SCP:REP 38->449|1bn8A_|9.3e-84|30.4|398/0|b.80.1.1|1/1|Pectin lyase-like| OP:NHOMO 282 OP:NHOMOORG 87 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------24----------5--1222----------------------------2-2----1-------------------------------------1-------------------------------------------13---1---------------123312----------------------------------------------------------1----------------------------------------------------1-----------1-------1-2---1----------------------1--------------------------------------------------------1-----------------------------------------------------------------------1--------------1--------------------1-----------------------------------------------------------3----------------------------------3---------------------------------------44------------------------------------44----------------------------------------------------------1--------------------------5-------2-----------------------------------33333111-------------------------------------------------------111----- ---------------1224211-2122-------------------21--556589253111-----------------------------1214------------------------------------------------------------------------------------------M76N-RA------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 412 STR:RPRED 91.8 SQ:SECSTR #####################################ccGGGccccTTccGGGcTTcccTTTTccGGGEEEEccHHHHHHHHcccTTccccEEEEEccEEEccccTTcccccHHHHccTTccHHHHHHHHcHHHHcEccccccHHHHHHHHHHHHHHHHHEEEccccEEEEEcTTccEEEccEEEEEccEEEEEEccEEEcccccccEEETTcTTTcEEEcccccEEEEccEEEEEEccEEEcTTccGGGccEETTEEcccccccEEEETTcEEEEEEccEEEEEEEccEEcccTTcGGGTTcccEEEEccEEEEEEEcccEEccccEEEEccEEcEccTTcccccccccEEEcTTcccEEEccEEEcTTcccGGGEEEcTTccccEEEccEETTEEHTEEccccccccHHHHTTcccccccccccccccccHHHHHHHHHHccTTccT DISOP:02AL 1-3| PSIPRED cccccEEEEEEEEEHHHHHcccccccHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccEEEEccHHHHHHHHHccccccccEEEEEEEEEEEEEccccccccccccccccccHHHHEEEcccccccccccccccEEEEEEEEEEcccccEEEEEcccEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEEEEcccccccccccccccccccccccEEEEEcccEEEEEEEEEEcccccccccccccccccEEcccEEEEEccccEEEEEEEEEEEccEEEEEEcccccHHHcccEEEEEEEEEEEcccccccEEEccEEEEEEEEEEcccccccccccEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccEEEccEEEccccccccccccccccccccEEEccccccccccHHHHHHHHHHccccccc //