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Thermobifida fusca YX (tfus0)
Gene : AAZ54391.1
DDBJ      :             trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  866/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
b.36.1b.47.1
:583 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   270->564 2z9iB PDBj 1e-58 52.5 %
:RPS:PDB   271->487 1befA PDBj 4e-21 18.8 %
:RPS:PDB   471->567 2edzA PDBj 3e-14 19.6 %
:RPS:SCOP  293->478 2bhgA1  b.47.1.4 * 2e-23 15.4 %
:RPS:SCOP  463->567 1nf3C  b.36.1.1 * 3e-13 13.3 %
:HMM:SCOP  245->505 1qtfA_ b.47.1.1 * 3.8e-62 45.9 %
:HMM:SCOP  440->582 1be9A_ b.36.1.1 * 7e-18 41.7 %
:RPS:PFM   422->463 PF00949 * Peptidase_S7 8e-05 40.0 %
:RPS:PFM   509->562 PF00595 * PDZ 9e-04 40.7 %
:HMM:PFM   277->482 PF00089 * Trypsin 3.7e-16 23.1 182/219  
:HMM:PFM   503->562 PF00595 * PDZ 3.1e-08 30.0 60/81  
:BLT:SWISS 293->567 DEGP_RHIME 2e-37 37.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54391.1 GT:GENE AAZ54391.1 GT:PRODUCT trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(396909..398660) GB:FROM 396909 GB:TO 398660 GB:DIRECTION - GB:PRODUCT trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain GB:PROTEIN_ID AAZ54391.1 GB:DB_XREF GI:71914489 InterPro:IPR001478 InterPro:IPR001940 LENGTH 583 SQ:AASEQ MSAIDRGSGSSMEEPERPEGPLADADGRESVTDHQDTTAADTPEDATTGSAARSETGAAPDTAQAASAPSAAAAPASEPAASAAEQRDASHEAPAPGSRETPPHPAPRPAPFAPQSHAPHPAWGPPAPDQATARHGAQAYPGPEAPQPAPGRPGPPPAGGVPAGAAQGAWQERPAQHDQPNSPTGAWAVPPSPGGFFPPTGGFPTLHGSSPFEGAPPPGKPQRSGRVVLIAAVTALITSLIVGPAASVATAYFLSEQVAANPAATSAASGDVTKVAAKALPSVVSIATAEGGGSGFIIRDDGLIVTNNHVVSDAQELTVLFHDGSQASATIVGTDPVSDLAVIRAQGVSGLTPASLGDSDQVEVGAEVVAIGAPLGLSGTVTSGVVSAVERPVNTGVSGQQDSPLLPSPDEEEPQATTSTVIDAIQTDAPINPGNSGGPLVNMNGEVIGINTAIATTSGNFMSQSGSIGLGFAIPINQAKPIIEELINTGKATYAAIEASVTVAEDGPGAELVEVNRGGAADQAGLRKGDVIIRIEDRMVTDPNVLIAEIRSHRPGDTVTITYQRGGQTAQTTVTLAAQSLDN GT:EXON 1|1-583:0| BL:SWS:NREP 1 BL:SWS:REP 293->567|DEGP_RHIME|2e-37|37.4|246/504| TM:NTM 1 TM:REGION 228->250| SEG 36->48|dttaadtpedatt| SEG 58->84|aapdtaqaasapsaaaapasepaasaa| SEG 102->114|pphpaprpapfap| SEG 117->128|haphpawgppap| SEG 136->169|gaqaypgpeapqpapgrpgpppaggvpagaaqga| SEG 190->205|ppspggffpptggfpt| SEG 259->268|aanpaatsaa| SEG 362->373|vevgaevvaiga| SEG 375->387|lglsgtvtsgvvs| SEG 402->414|dspllpspdeeep| SEG 568->579|qtaqttvtlaaq| BL:PDB:NREP 1 BL:PDB:REP 270->564|2z9iB|1e-58|52.5|257/267| RP:PDB:NREP 2 RP:PDB:REP 271->487|1befA|4e-21|18.8|165/177| RP:PDB:REP 471->567|2edzA|3e-14|19.6|97/114| RP:PFM:NREP 2 RP:PFM:REP 422->463|PF00949|8e-05|40.0|40/150|Peptidase_S7| RP:PFM:REP 509->562|PF00595|9e-04|40.7|54/82|PDZ| HM:PFM:NREP 2 HM:PFM:REP 277->482|PF00089|3.7e-16|23.1|182/219|Trypsin| HM:PFM:REP 503->562|PF00595|3.1e-08|30.0|60/81|PDZ| GO:PFM:NREP 4 GO:PFM GO:0003723|"GO:RNA binding"|PF00949|IPR001850| GO:PFM GO:0003724|"GO:RNA helicase activity"|PF00949|IPR001850| GO:PFM GO:0005524|"GO:ATP binding"|PF00949|IPR001850| GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| RP:SCP:NREP 2 RP:SCP:REP 293->478|2bhgA1|2e-23|15.4|149/194|b.47.1.4| RP:SCP:REP 463->567|1nf3C|3e-13|13.3|105/123|b.36.1.1| HM:SCP:REP 245->505|1qtfA_|3.8e-62|45.9|218/0|b.47.1.1|1/1|Trypsin-like serine proteases| HM:SCP:REP 440->582|1be9A_|7e-18|41.7|108/0|b.36.1.1|1/1|PDZ domain-like| OP:NHOMO 2199 OP:NHOMOORG 965 OP:PATTERN --1----1111111111111111-111--1----1-----------1-----------------1-13 2362511111111133333-33333333333334442353244433112221223111113321325344211111111111412222111111111--1111122212111111111111111111111111131333333333333473342222333333233544453322122322235321122-313222222222222222113333223121112211111134211111111111111211221111111111111111111122211111111111111111111111111111111111111111111111111311111111111412222222121121121222221212222221-2227333532222446575435445333333333333-55455554353153335556553433333312333322333333333233335331111111111--111111111111111111212212222234454433333554533333344444432243353242344342233242222111111122335312111123242222123233223244447534111111111111111111112112-331112233222122222222222222222221-1323411-11133332233333333333-3333333333333333333232332223333333333333333333332333133333333333311311111122224332212222222221222221222222223322222222222222222---------12222222222222222222222222222--412222221111111122--------------------------1111111111351 ------------11----------------------------------------------------------------------------------------------6-234437123-1242752729G4-32713-25332313-1-4--6142231-111---------1-4333j332547334-463421115 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 298 STR:RPRED 51.1 SQ:SECSTR #############################################################################################################################################################################################################################################################################THHHHHHHccccccccccccccccccEEcEEcccEEccHHHHTTcHHHHcccccccEEccccccEETTTTEEccEcccccccccccccccEEEccccccEcccccccccTTcTTTTTTEEccccccTTccEEccccEEEEEEcccEEcccEEcEEEcccccccTTcTTcEEEEccccEEEEEEEEHHHHHcTEEccccEEEEEEEEHHHHTTTcccTTETHHHHHHHHHHHHHHHTTccccEEccEEETTEEEEEEEcTTccEEEEcccccccGGGTTcccccccTTccccEEEEETT################ DISOP:02AL 1-222, 252-277, 579-583| PSIPRED ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHccccEEEEccccccccEEEEEcccEEEEEHHEEccccEEEEEEccccEEEEEEEEEcccccEEEEEEEccccccEEEEccccccccccEEEEEEccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEEcEEcccccccEEEcccccEEEEEEEEEEccccccccccccccEEEEcHHHHHHHHHHHHHcccEEEEEEEEEEEcccccccEEEEEEccccHHHHcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEEcccccc //