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Thermobifida fusca YX (tfus0)
Gene : AAZ54462.1
DDBJ      :             transcription-repair coupling factor
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  880/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.37.1d.315.1
:1210 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   66->251,440->1128 2eyqB PDBj e-162 44.7 %
:RPS:PDB   77->352 2b2nA PDBj 4e-14 23.8 %
:RPS:PDB   604->1010 3bxzB PDBj 2e-48 11.7 %
:RPS:SCOP  63->328 2b2nA1  c.37.1.19 * 4e-44 25.3 %
:RPS:SCOP  418->508 2eyqA2  c.37.1.19 * 7e-11 24.4 %
:RPS:SCOP  529->602 2eyqA1  b.34.18.1 * 5e-24 41.2 %
:RPS:SCOP  603->835 2eyqA3  c.37.1.19 * 6e-76 49.4 %
:RPS:SCOP  836->1045 2eyqA5  c.37.1.19 * 3e-72 53.3 %
:RPS:SCOP  1044->1202 2eyqA6  d.315.1.1 * 1e-30 20.8 %
:HMM:SCOP  36->399 2eyqA4 c.37.1.19 * 1.7e-73 36.1 %
:HMM:SCOP  407->521 2eyqA2 c.37.1.19 * 4.6e-16 29.8 %
:HMM:SCOP  519->602 2eyqA1 b.34.18.1 * 3e-19 47.4 %
:HMM:SCOP  602->892 1z3iX2 c.37.1.19 * 3.6e-63 27.8 %
:HMM:SCOP  836->1046 2eyqA5 c.37.1.19 * 2.7e-54 33.6 %
:HMM:SCOP  1043->1205 2eyqA6 d.315.1.1 * 6.4e-37 34.8 %
:RPS:PFM   531->629 PF02559 * CarD_TRCF 8e-20 51.6 %
:RPS:PFM   680->822 PF00270 * DEAD 5e-07 34.1 %
:RPS:PFM   894->964 PF00271 * Helicase_C 7e-06 34.3 %
:RPS:PFM   1058->1138 PF03461 * TRCF 4e-18 44.4 %
:HMM:PFM   529->629 PF02559 * CarD_TRCF 2e-30 44.2 95/98  
:HMM:PFM   1058->1142 PF03461 * TRCF 2.9e-29 38.8 85/101  
:HMM:PFM   659->819 PF00270 * DEAD 4.9e-19 23.0 148/167  
:HMM:PFM   893->963 PF00271 * Helicase_C 2.5e-14 31.4 70/78  
:BLT:SWISS 79->1200 MFD_MYCTU 0.0 55.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54462.1 GT:GENE AAZ54462.1 GT:PRODUCT transcription-repair coupling factor GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(475896..479528) GB:FROM 475896 GB:TO 479528 GB:DIRECTION - GB:PRODUCT transcription-repair coupling factor GB:PROTEIN_ID AAZ54462.1 GB:DB_XREF GI:71914560 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR011545 LENGTH 1210 SQ:AASEQ MPHVLRPLRAGRPSSHAPPGDMSLNGLLSVVTGDPALKRAIETARNGHDPLLDLVAPPSVRPLIVAGLAADAPVGAGRPVLALTATEREAADLNSALGSLLPADSVALFPAWETLPHERLSPRSDTVGQRLAVLRRLTHPDPDDPLTAPLRVVVAPIRSVLQPLVSGLGDLQPVRVREGDSVALDELVQSLVDIGYSRVDLVEKRGDIAVRGGILDVFPPTEEHPLRLEFWGDTVEEIRYFQVADQRSISKPGAAEAGLFAPPCRELLLTDTVRKRARALAAEYPALADILTKLADGVAVEGMEAFAPVLADRMELLLDLLPPGTHIVGCDPERIRTRAQELVATSQEFLEASWINAASGGEAPIDLGASAYQSIAELRSRARELGLPWWTVTPFDPGNPAAAEDDHSVVVGASATDAYRGDTERAIADVKSWLHEGWRVVLLTPGQGPAERLASMLRDAGLGTQLRDALPEPPEPAVATVTTGLLEHGFVWRSVRTVLLTETDLVGQRSSTRDMRRMPSRRRGVDPLQLKPGDYVVHEQHGIGRYVEMVSRTIQGATREYLVIEYAPSKRGQPGDRLFVPTDQLDEVTRYVGGDSPTLSKMGGSDWAKAKSRARKAVREIAGDLIRLYSARHASPGHAFSPDTPWQRELEDAFPYVETPDQLAAIEEVKRDMEKPVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFTERYASFPVTVRPLSRFQSDAEIERIREGMRTGEVDVVIGTHRLLSPETQFKDLGLVIIDEEQRFGVEHKEALKRLRTQVDVLSMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYDEKQIAAAIRRELMREGQVFFVHNRVASIERAAATVSRLVPEARVAWAHGQMNEHQLERVMVDFWEKKFDVLVCTTIVESGLDVPNANTLIVDRADTYGLAQLHQLRGRVGRGRERAYAYFLYPPDKPLTETAHERLATVAQHTESGAGMYVAMKDLEIRGAGNILGTEQSGSIAGVGFDLYVRMVGEAVRELKGDQSAAQEVETKVELPINAHIPHDYVPGERLRLEAYRRIAEVASEDDIAAIREELLDRYGEPPQPVDNLLAVARFRVLARSAGLTDVVLQGTQIRFAPVELRESQQLRLRRLYPKAVVKAATRTLMVPVPKSGGLGGKQLRDRELLTWCTELVEAIFEPQRKPPQE GT:EXON 1|1-1210:0| BL:SWS:NREP 1 BL:SWS:REP 79->1200|MFD_MYCTU|0.0|55.8|1109/1234| SEG 276->288|raralaaeypala| SEG 316->321|llldll| SEG 509->523|rsstrdmrrmpsrrr| SEG 608->619|akaksrarkavr| SEG 1144->1156|elresqqlrlrrl| BL:PDB:NREP 1 BL:PDB:REP 66->251,440->1128|2eyqB|e-162|44.7|859/1143| RP:PDB:NREP 2 RP:PDB:REP 77->352|2b2nA|4e-14|23.8|265/308| RP:PDB:REP 604->1010|3bxzB|2e-48|11.7|401/440| RP:PFM:NREP 4 RP:PFM:REP 531->629|PF02559|8e-20|51.6|93/100|CarD_TRCF| RP:PFM:REP 680->822|PF00270|5e-07|34.1|138/167|DEAD| RP:PFM:REP 894->964|PF00271|7e-06|34.3|70/76|Helicase_C| RP:PFM:REP 1058->1138|PF03461|4e-18|44.4|81/101|TRCF| HM:PFM:NREP 4 HM:PFM:REP 529->629|PF02559|2e-30|44.2|95/98|CarD_TRCF| HM:PFM:REP 1058->1142|PF03461|2.9e-29|38.8|85/101|TRCF| HM:PFM:REP 659->819|PF00270|4.9e-19|23.0|148/167|DEAD| HM:PFM:REP 893->963|PF00271|2.5e-14|31.4|70/78|Helicase_C| GO:PFM:NREP 12 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0003684|"GO:damaged DNA binding"|PF03461|IPR005118| GO:PFM GO:0004386|"GO:helicase activity"|PF03461|IPR005118| GO:PFM GO:0005524|"GO:ATP binding"|PF03461|IPR005118| GO:PFM GO:0006281|"GO:DNA repair"|PF03461|IPR005118| RP:SCP:NREP 6 RP:SCP:REP 63->328|2b2nA1|4e-44|25.3|249/308|c.37.1.19| RP:SCP:REP 418->508|2eyqA2|7e-11|24.4|90/117|c.37.1.19| RP:SCP:REP 529->602|2eyqA1|5e-24|41.2|68/80|b.34.18.1| RP:SCP:REP 603->835|2eyqA3|6e-76|49.4|233/233|c.37.1.19| RP:SCP:REP 836->1045|2eyqA5|3e-72|53.3|210/211|c.37.1.19| RP:SCP:REP 1044->1202|2eyqA6|1e-30|20.8|154/158|d.315.1.1| HM:SCP:REP 36->399|2eyqA4|1.7e-73|36.1|341/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 407->521|2eyqA2|4.6e-16|29.8|114/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 519->602|2eyqA1|3e-19|47.4|78/0|b.34.18.1|1/1|CarD-like| HM:SCP:REP 602->892|1z3iX2|3.6e-63|27.8|273/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 836->1046|2eyqA5|2.7e-54|33.6|211/0|c.37.1.19|3/3|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 1043->1205|2eyqA6|6.4e-37|34.8|158/0|d.315.1.1|1/1|TRCF domain-like| OP:NHOMO 2170 OP:NHOMOORG 906 OP:PATTERN ------------------------11111--1------------------------------------ 2223332222222222333-33223233333233332233333333333223333233222233332233332333223332221232222232222--2222222222211111111112222122222222222333224433423323322233222222222233223322333332232222232223333333333333333322333333333333333333333233333333333332333333323233233233333333333333333333333333333333333333333333333333344222333322322333334333322223222332223232222234231222233222323222232222223332232232233323333333-33333333322233322223432323222222223322222222222333442222222222211--2212222222222111113233222222222222222222222222222232222222222232222222232222222222222222222322212122222121122333333323333322111222222222222222222232222222233222232322222222322222222321-22222-1111133232323333333333-33333333333333333333333323233333333333333332333333321222222222222--32222223333222223222332222232233333432222222222233323333233322222222234442222223334322222222222222221222222222222222222---1---------------------2232222222312 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------1-1-12A2231-1224-22111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1007 STR:RPRED 83.2 SQ:SECSTR ###################################HHHHHHHHHHTTccEEEEEEcTTccHHHHHHHHHHHHcHHHcccEEEEcccHHHHHHHHHHHHHHccccEEEEEccTcccccccEETTTTEEccccccHHHHHHHHHHHTTTcccEEEEEcGGGGccccccTTTccccEEEEccccccTTTHHHHTTTTTcccccccccccccccccTTccccEEcccTTcccccEEEccccccEEEcccccccccEcccEEEEcEcccccccccHHHHHHHHTTccccccTTcHHHHHHTTcccTTGGGGGGGcccccccGGGGccTTcEEE#EEcccHHHHHHHHHHHHHHHHHH#######################################################################################EEEEEccHHHHHHHHHHHTTTTcccccccccccccccc#ccEEEccccccEEETTTTEEEcccTTTcccccccccTTccccccHHHTTccccTTcEEEETGGcEEEEEEEcccEETTEEEEEETTTccEEEcccTTcEEEEEEEccccccEEEEEcEEEEGGGccHHHHHHHHHHHHHHHHHHHHHTTccHHHHHTHHHHHHHHHHTTccGGGcHHHHHcccHHHHHHHHHTTTcTTTcETEEEEccTTccHHHHTHHHHHHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHHHTcccGGHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHHHHHHTccEEEEcccHHHHHHHHHHHHHTcccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHHHHTTcccccTTTTHHHHTTHHHHHHHHHHTTccEEcccTTHHHHHHHTccGGGcccEEEEEEEHHHHccccccccccHHHHHHHHHTcccccHHHHHHHHHTTHccccHHHHHHHHHHHHHTTcccccccGGGGGGGGGGGGccccTTEEcccccccccccEEcccHHHHHHHHHHHTTcccccHHHHHHH############################################################################### DISOP:02AL 1-2, 11-21, 397-402, 507-524, 1176-1178, 1202-1210| PSIPRED cccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEHHHHccccccHHHHccEEEEEEcccccHHHHHHHHHHHccEEccccccccEEEEEccEEEEEcccccccEEEEEEccEEEEEEEEEccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEcccHHHHccccEEEEEEEcHHcccccccccEEEEEcHHHHcHHHHHHHHHHHHHHHHcccccccccccEEEEEEccEEEEEEEEEEEcccccEEEEEEEEccccccccccEEEEEHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHccccEEEEEcHHHHHcccccccccEEEEEccccccHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccEEEEEEccccccccEEEEEEEccHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHccccEEEEEHHHHHHccccccccEEEEEcccccccccEEEEEEEcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccEEEccccccccHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEccccEEEEEEcccccHHHHHHHHHccccEEEEcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccc //