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Thermobifida fusca YX (tfus0)
Gene : AAZ54601.1
DDBJ      :             transcriptional regulator, PadR family
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  132/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:268 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->77 2eshA PDBj 9e-05 46.4 %
:RPS:PDB   20->77 2co5B PDBj 3e-07 30.9 %
:RPS:PDB   95->147 1av1A PDBj 8e-04 17.0 %
:RPS:SCOP  20->130 1yg2A  a.4.5.61 * 9e-12 19.6 %
:HMM:SCOP  9->180 1yg2A_ a.4.5.61 * 5.8e-28 33.7 %
:RPS:PFM   20->77 PF03551 * PadR 5e-09 55.2 %
:HMM:PFM   7->84 PF03551 * PadR 7.2e-26 52.6 78/86  
:HMM:PFM   106->170 PF05750 * Rubella_Capsid 0.00024 30.8 65/300  
:BLT:SWISS 24->77 YQJI_SHIFL 2e-09 48.1 %
:BLT:SWISS 172->250 PPN1_NEUCR 6e-04 35.6 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54601.1 GT:GENE AAZ54601.1 GT:PRODUCT transcriptional regulator, PadR family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(638395..639201) GB:FROM 638395 GB:TO 639201 GB:DIRECTION - GB:PRODUCT transcriptional regulator, PadR family GB:PROTEIN_ID AAZ54601.1 GB:DB_XREF GI:71914699 LENGTH 268 SQ:AASEQ MTTIFGHGRLRLYLLKLLDESPRHGYEIISLLRDRFLGIYSPSPGTIYPRLARLEEEGLVTHEEVNGRKVYRLTDKGRAELRERERDLEDLERQITESVRDIAQAVQRDVRDTISHLREELKATAQHTRRSRSERQESAKTGADDVWSRAADEQEERRDREREHGFAWNREWEKFAHTFGWVWPKGPKDRAAGSGFERILHDFTHRVRDIIRETGGISEAAIADLRRILDETLDIIRRDAARWGPPPTDSASRATDNADKEQTPRSTE GT:EXON 1|1-268:0| BL:SWS:NREP 2 BL:SWS:REP 24->77|YQJI_SHIFL|2e-09|48.1|54/207| BL:SWS:REP 172->250|PPN1_NEUCR|6e-04|35.6|73/100| COIL:NAA 32 COIL:NSEG 1 COIL:REGION 78->109| SEG 9->18|rlrlyllkll| SEG 78->93|raelrererdledler| SEG 149->163|raadeqeerrdrere| BL:PDB:NREP 1 BL:PDB:REP 20->77|2eshA|9e-05|46.4|56/114| RP:PDB:NREP 2 RP:PDB:REP 20->77|2co5B|3e-07|30.9|55/94| RP:PDB:REP 95->147|1av1A|8e-04|17.0|53/201| RP:PFM:NREP 1 RP:PFM:REP 20->77|PF03551|5e-09|55.2|58/84|PadR| HM:PFM:NREP 2 HM:PFM:REP 7->84|PF03551|7.2e-26|52.6|78/86|PadR| HM:PFM:REP 106->170|PF05750|0.00024|30.8|65/300|Rubella_Capsid| RP:SCP:NREP 1 RP:SCP:REP 20->130|1yg2A|9e-12|19.6|107/169|a.4.5.61| HM:SCP:REP 9->180|1yg2A_|5.8e-28|33.7|172/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 147 OP:NHOMOORG 136 OP:PATTERN ------1--------1----------------------------2----------------------- ---13--1111----11-------1-------11111111-111-----11-221--1----1-1--2221-----------1----------------------------------------------------------11-----1-----------------1---------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------11-------21------11112-------------------1-1--1---11-111--11-------------111111111111--11-----------------------------------1111-111111-111111111111-11111111----1---------1--------1-------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------111111111111-------------------------------------------------1111-111--111------------------------11-1-11------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 111 STR:RPRED 41.4 SQ:SECSTR ###################TTEEEGGGHHHHHHHHccccccccHHHHHHHHHHHHHTTcEEEEccTTccEEEEcHHH#################HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHTccccccccccHHHHH######################################################################################################################### DISOP:02AL 1-2, 248-268| PSIPRED cccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccHHccccccc //