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Thermobifida fusca YX (tfus0)
Gene : AAZ54623.1
DDBJ      :             alpha amylase, catalytic subdomain
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  220/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.71.1c.1.8d.151.1e.45.1
:655 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   214->409 3dhuA PDBj 3e-19 34.1 %
:BLT:PDB   526->630 1uh4A PDBj 2e-04 38.5 %
:RPS:PDB   190->643 3dhpA PDBj 3e-29 12.1 %
:RPS:SCOP  59->320 1nh1A  e.45.1.1 * 3e-30 9.3 %
:RPS:SCOP  389->434 1vybA  d.151.1.1 * 4e-04 23.9 %
:RPS:SCOP  563->643 1izjA2  b.71.1.1 * 1e-05 32.9 %
:HMM:SCOP  193->555 1gjwA2 c.1.8.1 * 9.8e-81 28.9 %
:RPS:PFM   3->185 PF11896 * DUF3416 6e-30 46.4 %
:RPS:PFM   220->410 PF00128 * Alpha-amylase 9e-10 29.5 %
:HMM:PFM   2->186 PF11896 * DUF3416 8.8e-60 52.7 182/187  
:HMM:PFM   222->413 PF00128 * Alpha-amylase 2.5e-10 24.4 172/316  
:BLT:SWISS 2->652 PEP1B_STRCO 0.0 63.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54623.1 GT:GENE AAZ54623.1 GT:PRODUCT alpha amylase, catalytic subdomain GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(669306..671273) GB:FROM 669306 GB:TO 671273 GB:DIRECTION - GB:PRODUCT alpha amylase, catalytic subdomain GB:PROTEIN_ID AAZ54623.1 GB:DB_XREF GI:71914721 InterPro:IPR001589 InterPro:IPR006589 LENGTH 655 SQ:AASEQ MIGRFPILDVSPVVDIGTAKAVVGETFPVRATVFREGHEALGAGVVLYTPEGQRQPLVPLREIAPGTDRYEAEVTVTSEGLWHFAIEAWSDPYATWCHDARIKIPAGQDVELMLEEGARLLERAARRVPRRPALAEIAAAMRDGSRSAHERLDLALSDLVRDELAERPLRELVTRSQRFPVMVSRRRALFGSWYEFFPRSEGAVLDTEDGEPRSGTFATAARRLPAIADMGFDVVYIPPIHPVGYSFRKGRNNSTVAQPGDPGSVWAIGSHEGGHDAIHPDLGTIDDFDAFVARARELGLEIAMDLALQASPDHPWVKEHPEWFTVRADGSIAYAENPPKKYQDIYPINFDKDPEGIFTEVRRIVRYWMSHGVRIFRVDNPHTKPVAFWERLLADIAATDPDVIFLSEAFTRPAMMHTLAKIGFHQSYTYFTWRNTKQELEEYLTELTGEAAAYMRPNFFVNTPDILHAYLQHGGRPAFEVRAILAATLSPTWGMYSGYELCENRALKPGSEEYLDSEKYQYKPRDWEAAEAAGITITPLIRKLNSLRRSHPALQELRNLRFHYADQPEIICYSKRLAGANHGADDTILVVANLDPHHTREATVWLDMPALGFAPGDHITVTDQLSGHSYHWVEANYVRLDPHVQTAHIFTVAPA GT:EXON 1|1-655:0| BL:SWS:NREP 1 BL:SWS:REP 2->652|PEP1B_STRCO|0.0|63.5|639/669| SEG 111->136|elmleegarlleraarrvprrpalae| SEG 439->453|eleeylteltgeaaa| BL:PDB:NREP 2 BL:PDB:REP 214->409|3dhuA|3e-19|34.1|176/422| BL:PDB:REP 526->630|1uh4A|2e-04|38.5|91/637| RP:PDB:NREP 1 RP:PDB:REP 190->643|3dhpA|3e-29|12.1|404/495| RP:PFM:NREP 2 RP:PFM:REP 3->185|PF11896|6e-30|46.4|181/188|DUF3416| RP:PFM:REP 220->410|PF00128|9e-10|29.5|166/296|Alpha-amylase| HM:PFM:NREP 2 HM:PFM:REP 2->186|PF11896|8.8e-60|52.7|182/187|DUF3416| HM:PFM:REP 222->413|PF00128|2.5e-10|24.4|172/316|Alpha-amylase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 3 RP:SCP:REP 59->320|1nh1A|3e-30|9.3|216/290|e.45.1.1| RP:SCP:REP 389->434|1vybA|4e-04|23.9|46/236|d.151.1.1| RP:SCP:REP 563->643|1izjA2|1e-05|32.9|70/83|b.71.1.1| HM:SCP:REP 193->555|1gjwA2|9.8e-81|28.9|343/572|c.1.8.1|1/1|(Trans)glycosidases| OP:NHOMO 229 OP:NHOMOORG 222 OP:PATTERN -------------------------------------------------------------1------ 1--1-11111111-11111-11--1111111111111111111121111111111111----111--22111111111----1----------------1-1112--12----------------111111111-1111-----11-------1-----------------------------1----1-----------------------------------1----------------------------------1----11------------------------------------------------------------------------------------------------1------------------------1--11111111------------111111111-1----111-111--1-1-1---1111-----------1---1-11------------------------------1--1--1--1111-111-111111111111-111111---111--1-----11---1-1-1------------11------1---------111--------1-1---------------------------------1----1-1----------------------1---------------------------------------------------------------------------------------------------------1-------11--------------------1-11111111111111111--------------------------11111111------------------------1-------------------------111--1-11122- ----------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 646 STR:RPRED 98.6 SQ:SECSTR #EEEEEEcccccTTcccccGcccEEEcTTcEEEETTcTTcEEEEEccccTTcccEEEEEcccccccEEEEEEEEcccEEEEEEccccccccGGGTTccEEEEEEEETTEEEEEEEEccEEcccEETTEEccGGGccccEEEEEEEcccc#######ccccccHHHHHHHHTTTcccTTGGGGGGEEEEEccEEEEETTccGcccccccTTcccccHHHHHHHHHHTTTTTTccEEEEcccccEccTTcccEEccccccccTTTTccGGGGGcccccccccTTccHHHHHHHHHHHHHTTcEEEEEEccEEEETTcccccccTTcccccGGGTccTTTTccGGGccTTTEccTTcHHHHHHHHHHHHHHHHHTccEEEETTGGGccHHTcccccTTTccTTcccEEEEcccccccccccGGGGTTTcEEEcHHHHHHHHHHHHTcTTccGGGGGGccEEEccccTTGGGTcTTccTTcccGGGHHHHHccccEEEEEEccccccccccEETTEETTTTccccEETTEEccccccTTccccTTcccGGGcHHHHHHHHHHHHEEEEEccccEEEEEEEEEEEEEETTTTEEEEEEcccccccEEEccEEEEEEcccccEccEEEcTTTccEETTEcccEEEEcTTTTEEEEEETcT# PSIPRED ccccEEEEccccEEccccEEEEEccEEEEEEEEEEccccEEEEEEEEEccccccccEEEEEEccccccEEEEEEEccccEEEEEEEEEccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccHHHHccHHHcHHHHHHHHHcccccEEcccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHcccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccEEcccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHccccEEEEEccccEEEEEEEEEcccccccccEEEEEEEccccccccEEEEEEHHHHccccccEEEEEEEEEccEEEEcccEEEEEcccccEEEEEEEEcc //