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Thermobifida fusca YX (tfus0)
Gene : AAZ54663.1
DDBJ      :             regulatory proteins, IclR
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  357/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:240 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->223 2g7uC PDBj 6e-16 32.7 %
:RPS:PDB   19->66 1biaA PDBj 2e-04 18.8 %
:RPS:PDB   82->237 3d3oA PDBj 6e-24 15.7 %
:RPS:SCOP  10->75 1mkmA1  a.4.5.33 * 7e-09 22.7 %
:RPS:SCOP  83->237 1td5A  d.110.2.2 * 5e-29 27.7 %
:HMM:SCOP  10->81 1mkmA1 a.4.5.33 * 6.8e-13 37.5 %
:HMM:SCOP  65->241 1tf1A_ d.110.2.2 * 1.1e-36 40.4 %
:RPS:PFM   127->236 PF01614 * IclR 1e-11 45.5 %
:HMM:PFM   127->235 PF01614 * IclR 8.9e-25 40.4 109/129  
:HMM:PFM   13->60 PF09339 * HTH_IclR 1.4e-13 39.6 48/52  
:BLT:SWISS 7->237 YFAX_ECOLI 7e-17 29.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54663.1 GT:GENE AAZ54663.1 GT:PRODUCT regulatory proteins, IclR GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(727964..728686) GB:FROM 727964 GB:TO 728686 GB:DIRECTION - GB:PRODUCT regulatory proteins, IclR GB:PROTEIN_ID AAZ54663.1 GB:DB_XREF GI:71914761 InterPro:IPR005471 LENGTH 240 SQ:AASEQ MDNSSPSSGVGVLDKTMSVLTALESGPASLAQLVRLTGLSRPTAHRLAVALERHRMVARDSQGRFILGPRITELSIATGEDRLLAVATPILAQLRDHTGESAQLYRRQGDVRVCVAAAERMSGLRDTVPVGSELPMTAGSAAQVLLAWEDSERIRRTLRGAHFTAATLAQVRRRRWAESVGEREPGVASVSAPVFAPSGRIIAAVSVSGPLERLTRSPGRLHAPAVLAAANKISEALRHT GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 7->237|YFAX_ECOLI|7e-17|29.9|231/260| BL:PDB:NREP 1 BL:PDB:REP 13->223|2g7uC|6e-16|32.7|208/244| RP:PDB:NREP 2 RP:PDB:REP 19->66|1biaA|2e-04|18.8|48/292| RP:PDB:REP 82->237|3d3oA|6e-24|15.7|153/167| RP:PFM:NREP 1 RP:PFM:REP 127->236|PF01614|1e-11|45.5|110/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 127->235|PF01614|8.9e-25|40.4|109/129|IclR| HM:PFM:REP 13->60|PF09339|1.4e-13|39.6|48/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 10->75|1mkmA1|7e-09|22.7|66/75|a.4.5.33| RP:SCP:REP 83->237|1td5A|5e-29|27.7|155/179|d.110.2.2| HM:SCP:REP 10->81|1mkmA1|6.8e-13|37.5|72/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 65->241|1tf1A_|1.1e-36|40.4|171/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 1107 OP:NHOMOORG 359 OP:PATTERN ------------------------2-----1------------------------------------- --31411333311142211-14--2E111111443447II1212353-1-11B9B311--114275G35421111122----5-----------------------------------------------------111------1-------------------------------------2311211-411111111211211111233311121-12-2--------61-------------------------------------------------------------------------------------------1--------------1-----------1-----1-11-1224---1---------------2-531--71211-111111111-3-1-1--2-273--3224113231536----1451123322---------11-------------------------------------1--2EC7745565535553559955552363AADC7-1553123337293A31121---------------211-------1------------11-----------------------------------11--2---1-1-------------------------1-1------422322-5446566645-455465645446466566456523-1-6265646666656555343344431-211221122222----------------21111--------1-----1---1---3-11112323-2121-322-------------21111112-23--1--------------------------------------------------------------1-111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 97.1 SQ:SECSTR #######cTHHHccHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEEETTEEEEEEEEcccEEccHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccTTccccGGcHHHHHTTcHHHHHHHHHHHHHHHGGGHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHc DISOP:02AL 1-11, 239-240| PSIPRED cccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEcccccEEEEEccccEEEEEccHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHcccEEEccHHHcccEEEEEEEEcccccEEEEEEEEccHHcccHHHHHHHHHHHHHHHHHHHHHHccc //