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Thermobifida fusca YX (tfus0)
Gene : AAZ54712.1
DDBJ      :             tyrosine recombinase XerC subunit
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  718/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->297 1a0pA PDBj 4e-28 42.1 %
:RPS:PDB   13->298 3c28A PDBj 4e-26 11.9 %
:RPS:SCOP  13->117 1crxA1  a.60.9.1 * 2e-10 10.6 %
:RPS:SCOP  131->303 1aihA  d.163.1.1 * 1e-24 25.3 %
:HMM:SCOP  9->107 1a0pA1 a.60.9.1 * 2.6e-15 32.7 %
:HMM:SCOP  113->301 4crxA2 d.163.1.1 * 1.2e-45 39.5 %
:RPS:PFM   14->71 PF02899 * Phage_integr_N 8e-08 39.7 %
:RPS:PFM   140->288 PF00589 * Phage_integrase 2e-17 41.4 %
:HMM:PFM   119->288 PF00589 * Phage_integrase 6.2e-41 39.3 163/173  
:HMM:PFM   14->96 PF02899 * Phage_integr_N 4.6e-22 43.4 83/84  
:BLT:SWISS 13->303 XERC_MYCLE 8e-69 53.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54712.1 GT:GENE AAZ54712.1 GT:PRODUCT tyrosine recombinase XerC subunit GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 778537..779448 GB:FROM 778537 GB:TO 779448 GB:DIRECTION + GB:PRODUCT tyrosine recombinase XerC subunit GB:PROTEIN_ID AAZ54712.1 GB:DB_XREF GI:71914810 LENGTH 303 SQ:AASEQ MTDSPTTADTARILAEFDRHLRVERGCSPHTVRAYLTDVRSLLDYLADTGAGGLEDLDLATLRGWLGTLHDAGASRATMARRTAAARVFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARVCAAARDGEESPLVLRRSAVVEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERVVPIGVPALDAVDRWLRDGRPQWATAHSGRALFLGARGGRLGERTARRDVYAATAAVARTGPHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGRLASVYQQAHPRA GT:EXON 1|1-303:0| BL:SWS:NREP 1 BL:SWS:REP 13->303|XERC_MYCLE|8e-69|53.1|290/297| SEG 72->91|agasratmarrtaaarvfta| SEG 215->234|gralflgarggrlgertarr| BL:PDB:NREP 1 BL:PDB:REP 9->297|1a0pA|4e-28|42.1|266/271| RP:PDB:NREP 1 RP:PDB:REP 13->298|3c28A|4e-26|11.9|285/299| RP:PFM:NREP 2 RP:PFM:REP 14->71|PF02899|8e-08|39.7|58/84|Phage_integr_N| RP:PFM:REP 140->288|PF00589|2e-17|41.4|145/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 119->288|PF00589|6.2e-41|39.3|163/173|Phage_integrase| HM:PFM:REP 14->96|PF02899|4.6e-22|43.4|83/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 13->117|1crxA1|2e-10|10.6|104/110|a.60.9.1| RP:SCP:REP 131->303|1aihA|1e-24|25.3|150/170|d.163.1.1| HM:SCP:REP 9->107|1a0pA1|2.6e-15|32.7|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 113->301|4crxA2|1.2e-45|39.5|185/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1615 OP:NHOMOORG 734 OP:PATTERN ----------------2----------------11----1----1-1-------1111111111---- 2292322222222223422-22222222222252233431223312222221222222222232222---222222222222------322222222--32233322212222222222222222232323222321111123511--------------------2--------------------12222222222222222222222222222222225222222222212222222222222222222222222221222221122222222-------------------------------------------1---33211211111111121111---111-121324223322122211122-1322522222222223223222323222222222222-222232232423222522262222222226222222222222222225222232222222222222222112222222222222-22222222222222222222222282222222222243222233333322432222333322-22222224324332222-222224222222233223222222222------------1-------3-1-22223234--22332243222222322323222--24323------22442223223333323-222333333223333333223282AD22222232222222223222233322-222222222222---2---------2222-2222222222122222223222222222222222222222222222222222222227333332334422232333332222--32222222--------222-----------------------------1-----262 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 295 STR:RPRED 97.4 SQ:SECSTR ########HHHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHcTTcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHTcccHHHHHHHHHHHHHHHHcccHHHHHHccGGGccccccccHHHHHHHHHHHHHHTcTTcTTcccccEEcTTccEEccccccccHHHHHHHHHHHHHHHHccccccccccccTTHHHHHHHHHHHHccccHHHHHHHHTcccTHHHHHHHTTcGGGcHHHHHHGGTTT DISOP:02AL 1-7, 302-303| PSIPRED cccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEccccEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcccc //