[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ54752.1
DDBJ      :             exonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  467/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.15.1c.55.3
:516 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->114 2p1jB PDBj 5e-14 38.7 %
:RPS:PDB   20->243 3cg7B PDBj 4e-25 14.7 %
:RPS:PDB   336->413 2ebuA PDBj 3e-08 19.2 %
:RPS:SCOP  21->181 1j53A  c.55.3.5 * 2e-27 28.0 %
:RPS:SCOP  336->413 1l7bA  c.15.1.2 * 4e-08 28.6 %
:HMM:SCOP  9->191 2f96A1 c.55.3.5 * 3.7e-39 38.3 %
:HMM:SCOP  334->413 1l7bA_ c.15.1.2 * 2.1e-07 21.5 %
:RPS:PFM   23->177 PF00929 * Exonuc_X-T 2e-15 39.0 %
:HMM:PFM   23->177 PF00929 * Exonuc_X-T 2.1e-22 29.9 154/165  
:HMM:PFM   356->406 PF00533 * BRCT 3.6e-06 19.6 51/78  
:BLT:SWISS 19->183 DPO3E_RHOCA 1e-16 35.8 %
:BLT:SWISS 241->411 DNLJ_RHIME 1e-04 26.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54752.1 GT:GENE AAZ54752.1 GT:PRODUCT exonuclease GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 832638..834188 GB:FROM 832638 GB:TO 834188 GB:DIRECTION + GB:PRODUCT exonuclease GB:PROTEIN_ID AAZ54752.1 GB:DB_XREF GI:71914850 InterPro:IPR006055 LENGTH 516 SQ:AASEQ MVFHYGRLTRRGGLDPRTLTYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNSAFHGITDTWVKTAPSFDQVAGDLLAYLDGAIVVGHKLDFEEKFLAAEFARLGVPLTGIPGLCTLVAARYQLDRYGYRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELINAAPQPLHWDGPTPAPLPQLPRTRIIAPRAAALRKGSEGWLATLTARLPLMVDSPPPRSEALDDYQAMLAHALSDGRVVGEEAEQLALLASRAGLTQETARGVHGEFLLRARDRAEADGVVTAAELRELQRAAKNLAVSHLISDLEEAAAAEKARRNGPLKGWRILPVGEGKELTDVMDYAVDHGAKVAANVTKTVRLVIAPDGVETTKTAQARERGVPILTPKEAWTLLSAEVEQKQRGAALVADTRAGDVAARIAAEQAHEQAGETTNEWHQFWRPRELTDAEYRVKFVDRFADETAPVFTSSKTTQNGGCAGAILLLATLAGAAGTVPGLVG GT:EXON 1|1-516:0| BL:SWS:NREP 2 BL:SWS:REP 19->183|DPO3E_RHOCA|1e-16|35.8|165/704| BL:SWS:REP 241->411|DNLJ_RHIME|1e-04|26.8|168/717| TM:NTM 1 TM:REGION 494->516| SEG 201->215|lprtriiapraaalr| SEG 327->335|eeaaaaeka| SEG 492->515|ggcagailllatlagaagtvpglv| BL:PDB:NREP 1 BL:PDB:REP 20->114|2p1jB|5e-14|38.7|93/171| RP:PDB:NREP 2 RP:PDB:REP 20->243|3cg7B|4e-25|14.7|224/295| RP:PDB:REP 336->413|2ebuA|3e-08|19.2|78/112| RP:PFM:NREP 1 RP:PFM:REP 23->177|PF00929|2e-15|39.0|154/163|Exonuc_X-T| HM:PFM:NREP 2 HM:PFM:REP 23->177|PF00929|2.1e-22|29.9|154/165|Exonuc_X-T| HM:PFM:REP 356->406|PF00533|3.6e-06|19.6|51/78|BRCT| RP:SCP:NREP 2 RP:SCP:REP 21->181|1j53A|2e-27|28.0|161/174|c.55.3.5| RP:SCP:REP 336->413|1l7bA|4e-08|28.6|77/92|c.15.1.2| HM:SCP:REP 9->191|2f96A1|3.7e-39|38.3|180/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 334->413|1l7bA_|2.1e-07|21.5|79/92|c.15.1.2|1/1|BRCT domain| OP:NHOMO 670 OP:NHOMOORG 469 OP:PATTERN -------------------------------------------------------------------- ---11------21122222-22--222222221222112111122-111-----1-----1-2221111131111-------11-111-----------11212211-11---------------1--11-----222211---23---------11--------------------------111----1321333332333333333121111333222232111111121211111111111111111212-1-22-2---11112212221-222----1112--111111-111111111-11---1--22221222--1111----------1----111-2-1--22-----11-1--11-1--111------111111111111111111------------11-12111111-11111111111112-1-2-322222--11111111-11-122111-1----111111111111111111111-------1111333333211112222222222331111112111221---233-112521-2---111111--2424---------1--------111-11-----1----------------------1---1--11-212112211222222222222222222----22-----------1-1-------------------------------------1--------------------------------------1--111111----111-1------1--------111111111---1111--112111--111----------1111-----1111122--------11111-1-------------------1-----------------------11112111-1--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 332 STR:RPRED 64.3 SQ:SECSTR #############ccHHHcEEEEEEEEEcccTTcccccEEEEEEEEEETTTTEEEEEEEEccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHHHTTcEEEEEcccHHHHTHHHHHHHHTTccccGGGcEEEEHHHHHHHHHHcHHHHHHHHHTccccccTTcHHHHHHHHHHHHHHHHHTTccccccEEEEcccGGGGccccccTTGGGcHHHHHHHHHHHcccEEEEccGGGccGGGTT####TccTTTcccTTTTTcccccccGGG################################################################ccccccTTcEEEEccccccHHHHHHHHHHTTcEEcccccccccEEEEccccccHHHHHHHHHTcEEEEHHHHHHHHHH####################################################################################################### DISOP:02AL 194-217, 330-338, 443-444, 446-447| PSIPRED cccccccccccccccHHHccEEEEEEEEccccccccccEEEEEEEEEEcccEEEEEEEEEEcccccccccEEccccHHHHHccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHcccHHHHHHEEEEEEEEccccccHHHHHHHHHccccEEccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHHHccccccccccc //