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Thermobifida fusca YX (tfus0)
Gene : AAZ54769.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.118.8a.35.1
:418 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->61 3f52E PDBj 9e-07 43.6 %
:RPS:PDB   8->60 2axuG PDBj 8e-13 29.4 %
:RPS:PDB   238->363 3ck7D PDBj 2e-04 11.2 %
:RPS:SCOP  1->60 1y7yA1  a.35.1.3 * 6e-11 33.3 %
:HMM:SCOP  1->60 2b5aA1 a.35.1.3 * 3.5e-10 38.3 %
:HMM:SCOP  185->390 1qqeA_ a.118.8.1 * 0.00033 18.9 %
:RPS:PFM   12->60 PF01381 * HTH_3 2e-04 36.7 %
:HMM:PFM   12->60 PF01381 * HTH_3 1.2e-12 36.7 49/55  
:HMM:PFM   262->280 PF07721 * TPR_4 0.00055 36.8 19/26  
:HMM:PFM   307->330 PF07721 * TPR_4 0.00038 25.0 24/26  
:BLT:SWISS 7->60 Y023_MYCTU 3e-05 40.7 %
:BLT:SWISS 185->408 SP15_STRGR 5e-08 26.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54769.1 GT:GENE AAZ54769.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(860663..861919) GB:FROM 860663 GB:TO 861919 GB:DIRECTION - GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ54769.1 GB:DB_XREF GI:71914867 InterPro:IPR001387 LENGTH 418 SQ:AASEQ MGEENVSFGAELRRLRTEAGWSLADLAEAVHYSKSHLSKVETGRKSPSADLARACDTALGAEGRLAALVRGRRPTTRSGASGPPLPAAGPPLSPPHAFALGAGALLGLGPSGKEPPAFLGSADVLTAFRSMFDQARVLGQRTGPTLVLPTVAAQAHALTRLARGAKPKLAVPALLLASRFAEYGGWLAQEAGNSHGALWWTKHAVDLAAQAGDQEMRAQALIRRACVAMYAHDGLHTVALAQQAYAIAPSPRLRAMASEREAQGHALTGDYDQCRRALDRAEKEAAHETAEPSDRPLLGSSTVPNRLAVVTGWCMYDLGRPAEAAEILDRELSAIPHTAVRARVRFGMRRALAHAAAGNLERACTLAHGLLEKFAAVDSATVAHDVRQLARTLSRWHNDPAVRNLNPRLVLALRRAPV GT:EXON 1|1-418:0| BL:SWS:NREP 2 BL:SWS:REP 7->60|Y023_MYCTU|3e-05|40.7|54/256| BL:SWS:REP 185->408|SP15_STRGR|5e-08|26.6|218/529| SEG 78->95|sgasgpplpaagpplspp| SEG 97->109|afalgagallglg| SEG 165->177|akpklavpallla| BL:PDB:NREP 1 BL:PDB:REP 7->61|3f52E|9e-07|43.6|55/78| RP:PDB:NREP 2 RP:PDB:REP 8->60|2axuG|8e-13|29.4|51/299| RP:PDB:REP 238->363|3ck7D|2e-04|11.2|107/498| RP:PFM:NREP 1 RP:PFM:REP 12->60|PF01381|2e-04|36.7|49/55|HTH_3| HM:PFM:NREP 3 HM:PFM:REP 12->60|PF01381|1.2e-12|36.7|49/55|HTH_3| HM:PFM:REP 262->280|PF07721|0.00055|36.8|19/26|TPR_4| HM:PFM:REP 307->330|PF07721|0.00038|25.0|24/26|TPR_4| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 1->60|1y7yA1|6e-11|33.3|60/69|a.35.1.3| HM:SCP:REP 1->60|2b5aA1|3.5e-10|38.3|60/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 185->390|1qqeA_|0.00033|18.9|196/290|a.118.8.1|1/1|TPR-like| OP:NHOMO 24 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- ----3-------------------------------4-----33--------1-------21--1-11-31---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 181 STR:RPRED 43.3 SQ:SECSTR HHHHHHcHHHHHHHHHHHHTccHHHHcTTTTccHHHHHHHHTTcccccHHHHHHHHHHHTccHHHHHHTTcccH###################################################################################################################################################################HHTTTcccGGGccHHHHHHHHHHTTcccEEEccTTcTTHHHHHTTc######ccTTcHHHHHH##########HHHHHHHHHHHHHHHHHHTT###cccHHHHHHHHHHHHHHHHHHHHHHHHHcE####################################################### DISOP:02AL 1-4, 417-418| PSIPRED cccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccHHHHHccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccc //