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Thermobifida fusca YX (tfus0)
Gene : AAZ54819.1
DDBJ      :             tRNA pseudouridine synthase B
Swiss-Prot:TRUB_THEFY   RecName: Full=tRNA pseudouridine synthase B;         EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase;         Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase;

Homologs  Archaea  60/68 : Bacteria  884/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
b.122.1d.265.1
:293 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->289 1sgvB PDBj 1e-59 49.2 %
:RPS:PDB   1->290 2ab4A PDBj 6e-44 35.6 %
:RPS:SCOP  3->221 1k8wA5  d.265.1.2 * 2e-48 38.1 %
:RPS:SCOP  236->289 1sgvA1  b.122.1.1 * 3e-12 31.5 %
:HMM:SCOP  1->222 1k8wA5 d.265.1.2 * 1.8e-72 52.6 %
:HMM:SCOP  236->292 1sgvA1 b.122.1.1 * 7.5e-17 42.1 %
:RPS:PFM   24->180 PF01509 * TruB_N 2e-38 57.0 %
:RPS:PFM   236->291 PF09142 * TruB_C 3e-12 58.9 %
:HMM:PFM   24->180 PF01509 * TruB_N 3.4e-55 53.0 149/149  
:HMM:PFM   236->291 PF09142 * TruB_C 2.4e-23 51.8 56/56  
:HMM:PFM   3->20 PF08068 * DKCLD 1.1e-06 55.6 18/59  
:BLT:SWISS 1->293 TRUB_THEFY e-160 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54819.1 GT:GENE AAZ54819.1 GT:PRODUCT tRNA pseudouridine synthase B GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 923146..924027 GB:FROM 923146 GB:TO 924027 GB:DIRECTION + GB:PRODUCT tRNA pseudouridine synthase B GB:PROTEIN_ID AAZ54819.1 GB:DB_XREF GI:71914917 InterPro:IPR004510 LENGTH 293 SQ:AASEQ MADGVVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTEKVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVRGQRAYRRARAGETVELKAREVTVHEFTVTGFRRVDSPDGAFVDVDARVTCSSGTYIRSLARDLGADLGVGGHLTALRRTRVGPYTVEQAATLDELAAEFTVMPLAEAVAAAFPVRRLSAGEARRVVHGHRISPSGHSGPVGLFAPDGRVLALAENRSGSSQPVVVFAGS GT:EXON 1|1-293:0| SW:ID TRUB_THEFY SW:DE RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase; SW:GN Name=truB; OrderedLocusNames=Tfu_0781; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->293|TRUB_THEFY|e-160|100.0|293/293| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 127->134|rayrrara| BL:PDB:NREP 1 BL:PDB:REP 4->289|1sgvB|1e-59|49.2|254/266| RP:PDB:NREP 1 RP:PDB:REP 1->290|2ab4A|6e-44|35.6|281/300| RP:PFM:NREP 2 RP:PFM:REP 24->180|PF01509|2e-38|57.0|149/149|TruB_N| RP:PFM:REP 236->291|PF09142|3e-12|58.9|56/56|TruB_C| HM:PFM:NREP 3 HM:PFM:REP 24->180|PF01509|3.4e-55|53.0|149/149|TruB_N| HM:PFM:REP 236->291|PF09142|2.4e-23|51.8|56/56|TruB_C| HM:PFM:REP 3->20|PF08068|1.1e-06|55.6|18/59|DKCLD| GO:PFM:NREP 5 GO:PFM GO:0006396|"GO:RNA processing"|PF01509|IPR002501| GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF09142|IPR015225| GO:PFM GO:0003723|"GO:RNA binding"|PF09142|IPR015225| GO:PFM GO:0009451|"GO:RNA modification"|PF09142|IPR015225| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF09142|IPR015225| RP:SCP:NREP 2 RP:SCP:REP 3->221|1k8wA5|2e-48|38.1|210/242|d.265.1.2| RP:SCP:REP 236->289|1sgvA1|3e-12|31.5|54/57|b.122.1.1| HM:SCP:REP 1->222|1k8wA5|1.8e-72|52.6|213/242|d.265.1.2|1/1|Pseudouridine synthase| HM:SCP:REP 236->292|1sgvA1|7.5e-17|42.1|57/57|b.122.1.1|1/1|PUA domain-like| OP:NHOMO 1359 OP:NHOMOORG 1137 OP:PATTERN 1-11-1---11-11--1111111111111111111111111111111111111111111111111111 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-11--111111111-1-1111111-111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111111111111111111---1-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111-1111111111-1-------1111111111111111111111111111111-111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111-111111-111111-111111111111111111 2111122-41111111233222222222222222111222222222222222221221222222222212222222212222222222-2122221222212221312422231-232222222311227F2-434211132222222213-122232213421121511-11212222H2222233443222222223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 99.0 SQ:SECSTR cccEEEEEEEcccccHHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGGGGGGTTccEEEEEEEEETEEETTccTTccEEEEcccccccHHHHHHHHHTTcEEEEEccccccccccccccHHHHHHTTcccccccEEEEEEHHHEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEETTEETTTcccTTTccHHHHHcEEGGGccTTccEEEEcTTTHHHHTTcccEETTTcccEEEEEETTccccEEEEcccccccccEEE### PSIPRED cccEEEEEEccccccHHHHHHHHHHHHcccEEEEccccccccccEEEEEEccHHHHHHHHHcccEEEEEEEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHcccEEEccccEEEEEEccHHHHHHHHcccEEEccccEEEEEEEEEEcccccccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEEccccHHHcccHHHHHHHHHHccHHHHHHHcccEEEEcHHHHHHHHcccEEcccccccEEEEEEccccEEEEEEEcccEEEEEEEEccc //