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Thermobifida fusca YX (tfus0)
Gene : AAZ54841.1
DDBJ      :             DNA recombination protein RecA precursor
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  894/915 : Eukaryota  14/199 : Viruses  1/175   --->[See Alignment]
b.86.1c.37.1d.48.1d.95.2
:1177 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   28->95,1001->1130 1mo4A PDBj 9e-57 80.6 %
:BLT:PDB   152->210,455->517 1am2A PDBj 8e-07 44.6 %
:BLT:PDB   541->649 1ubgA PDBj 2e-39 72.5 %
:BLT:PDB   662->752 2in0A PDBj 1e-09 41.7 %
:RPS:PDB   28->99,515->1117 3cmxA PDBj 2e-36 30.6 %
:RPS:PDB   96->517 1dq3A PDBj 6e-26 16.3 %
:RPS:SCOP  27->99 1g18A1  c.37.1.11 * 2e-15 71.2 %
:RPS:SCOP  96->203,453->517 1am2A  b.86.1.2 * 3e-15 24.0 %
:RPS:SCOP  301->389 1dfaA3  d.95.2.2 * 3e-10 15.7 %
:RPS:SCOP  518->648 1g18A1  c.37.1.11 * 7e-20 67.2 %
:RPS:SCOP  650->760 1dq3A1  b.86.1.2 * 8e-18 17.6 %
:RPS:SCOP  747->811 1r7mA1  d.95.2.1 * 4e-08 22.6 %
:RPS:SCOP  854->944 1r7mA2  d.95.2.1 * 8e-21 21.6 %
:RPS:SCOP  985->1070 1g18A1  c.37.1.11 * 9e-17 62.8 %
:RPS:SCOP  1071->1130 1g18A2  d.48.1.1 * 9e-20 75.0 %
:HMM:SCOP  26->95 1ubeA1 c.37.1.11 * 8.8e-18 41.4 %
:HMM:SCOP  95->517 1am2A_ b.86.1.2 * 5.4e-43 35.6 %
:HMM:SCOP  518->709 1g19A1 c.37.1.11 * 5.8e-31 27.6 %
:HMM:SCOP  649->1006 1am2A_ b.86.1.2 * 6e-31 36.1 %
:HMM:SCOP  1000->1070 1ubeA1 c.37.1.11 * 3.7e-12 25.4 %
:HMM:SCOP  1071->1130 1ubeA2 d.48.1.1 * 5.6e-22 61.7 %
:RPS:PFM   45->99 PF00154 * RecA 3e-19 70.9 %
:RPS:PFM   142->232 PF07591 * DUF1557 6e-04 34.4 %
:RPS:PFM   515->649 PF00154 * RecA 2e-48 65.2 %
:RPS:PFM   659->752 PF07591 * DUF1557 3e-06 40.5 %
:RPS:PFM   761->915 PF03161 * LAGLIDADG_2 7e-05 26.5 %
:RPS:PFM   1001->1095 PF00154 * RecA 1e-40 78.9 %
:HMM:PFM   31->97 PF00154 * RecA 5.4e-30 70.1 67/323  
:HMM:PFM   515->650 PF00154 * RecA 2.2e-74 75.0 136/323  
:HMM:PFM   1001->1129 PF00154 * RecA 1.5e-57 66.4 128/323  
:HMM:PFM   760->917 PF03161 * LAGLIDADG_2 3.2e-14 16.0 150/179  
:HMM:PFM   648->732 PF01079 * Hint 0.00039 29.5 78/217  
:BLT:SWISS 25->99 RECA_ARTAT 3e-29 78.7 %
:BLT:SWISS 141->526 GYRA_MYCFV 2e-21 29.2 %
:BLT:SWISS 515->1131 RECA_MYCLE 0.0 62.1 %
:PROS 1016->1024|PS00321|RECA_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54841.1 GT:GENE AAZ54841.1 GT:PRODUCT DNA recombination protein RecA precursor GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 946506..950039 GB:FROM 946506 GB:TO 950039 GB:DIRECTION + GB:PRODUCT DNA recombination protein RecA precursor GB:PROTEIN_ID AAZ54841.1 GB:DB_XREF GI:71914939 InterPro:IPR001553 InterPro:IPR003586 InterPro:IPR003587 InterPro:IPR004042 InterPro:IPR006141 InterPro:IPR006142 LENGTH 1177 SQ:AASEQ MSLARRSVTPIMKKKASTQQGFPVAASDRDKALETALAQIERQFGKGTIMRLGDDNRPPIESIPTGSISLDVALGIGGIPRGRIVEIYGPESSGKCLTADTYVWTDRGLETVAEVFGRAGLPLSSTSRVTDVRDRDIRVVNEKGELEQVAALTHNGRQPVVRITVASGRQVTVTRNHPLRVMNDDGFIVWREAGQLREGDVLVSAAFGAVQAASGGGLSEDEAVLLGYLTAAGSLDPAGHVCFTTTDIETGAEFAALAEWLLDTTVTAVPGDGQVAYVLSDPAARHTLAERYGVDYAAAARIPQCVRTAGDKMQRAFLAALYTAAGWTDTSAAVGLRTASAPLAREVQYLLYGLGIPADLDRSHGNGQHPWAVTISPAAAPRFHTEVGFRTAQQSPQTGLHEPTPQVEAIPNLTGLIHALRDSIGDRAESTDDPFPAASGGAYDRDQVRRVIDWAKRRTDEAPATANAILGYLTQLTDARYTYEPITAVEDAGQQPTFDLMVPRTHSFLANGILSHNTTVALHAVANAQRAGGIAAFIDAEHALDPSYAEKIGVNIDDLLLSQPDTGEQALEIVDMLVRSGAISIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGALNQTKTTAIFINQLREKVGVMFGCMHYDTLVTLADGTQEKIGTIVDRKLDVEVLSYDPETDRIVPRRVVNWFDNGAADHFLQFTVGRSGKPGGAQFTATPNHLIRTPGGWREAGELIAGDRVLVHEPHYLNEQQRQVVYGSLMGRGTLVPDRHGGPGVHFCMAHTAEQAAYLDWKVSLLGNIAHSRTAEASATVGVEFTPMPELSELHRVVDFGDGHTHLTWEFLKQLTPLALAVWYLDAGTLTIPQSGTDDDARVQIDVETLSPGSRQRLVEYLRDTHELDAAVVQQGADARSLLEFTPAATVRFLELVAPYVPESMSSMLLAQFRGRCSVTPEYSDPVQRLVAAPVLDIQVKPGSTRKFDIEVEGNHNYFVDGVMVHNSPETTSGGRALKFYASVRMDVRRIETLKDGTEAVGNRTRVKVVKNKLAPPFKQAEFDILYGVGISREGGLLDLGVEHGIVRKSGAWYTYEGTQLGQGKENARNFLRANPDMADEIEKRIKQKLGIPTGDDSAPAEEAAKDEAKAASTTKRTTRKTTASTSASKSAAPSTDA GT:EXON 1|1-1177:0| BL:SWS:NREP 3 BL:SWS:REP 25->99|RECA_ARTAT|3e-29|78.7|75/347| BL:SWS:REP 141->526|GYRA_MYCFV|2e-21|29.2|363/554| BL:SWS:REP 515->1131|RECA_MYCLE|0.0|62.1|617/711| PROS 1016->1024|PS00321|RECA_1|PDOC00131| TM:NTM 1 TM:REGION 579->601| SEG 124->140|sstsrvtdvrdrdirvv| SEG 580->595|sgaisiividsvaalv| SEG 1135->1172|ddsapaeeaakdeakaasttkrttrkttastsasksaa| BL:PDB:NREP 4 BL:PDB:REP 28->95,1001->1130|1mo4A|9e-57|80.6|197/324| BL:PDB:REP 152->210,455->517|1am2A|8e-07|44.6|115/181| BL:PDB:REP 541->649|1ubgA|2e-39|72.5|109/330| BL:PDB:REP 662->752|2in0A|1e-09|41.7|84/139| RP:PDB:NREP 2 RP:PDB:REP 28->99,515->1117|3cmxA|2e-36|30.6|643/1603| RP:PDB:REP 96->517|1dq3A|6e-26|16.3|412/454| RP:PFM:NREP 6 RP:PFM:REP 45->99|PF00154|3e-19|70.9|55/274|RecA| RP:PFM:REP 142->232|PF07591|6e-04|34.4|85/126|DUF1557| RP:PFM:REP 515->649|PF00154|2e-48|65.2|135/274|RecA| RP:PFM:REP 659->752|PF07591|3e-06|40.5|84/126|DUF1557| RP:PFM:REP 761->915|PF03161|7e-05|26.5|147/176|LAGLIDADG_2| RP:PFM:REP 1001->1095|PF00154|1e-40|78.9|94/274|RecA| HM:PFM:NREP 5 HM:PFM:REP 31->97|PF00154|5.4e-30|70.1|67/323|RecA| HM:PFM:REP 515->650|PF00154|2.2e-74|75.0|136/323|RecA| HM:PFM:REP 1001->1129|PF00154|1.5e-57|66.4|128/323|RecA| HM:PFM:REP 760->917|PF03161|3.2e-14|16.0|150/179|LAGLIDADG_2| HM:PFM:REP 648->732|PF01079|0.00039|29.5|78/217|Hint| GO:PFM:NREP 10 GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00154|IPR013765| GO:PFM GO:0005524|"GO:ATP binding"|PF00154|IPR013765| GO:PFM GO:0006281|"GO:DNA repair"|PF00154|IPR013765| GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00154|IPR013765| GO:PFM GO:0005524|"GO:ATP binding"|PF00154|IPR013765| GO:PFM GO:0006281|"GO:DNA repair"|PF00154|IPR013765| GO:PFM GO:0004519|"GO:endonuclease activity"|PF03161|IPR004860| GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00154|IPR013765| GO:PFM GO:0005524|"GO:ATP binding"|PF00154|IPR013765| GO:PFM GO:0006281|"GO:DNA repair"|PF00154|IPR013765| RP:SCP:NREP 9 RP:SCP:REP 27->99|1g18A1|2e-15|71.2|73/250|c.37.1.11| RP:SCP:REP 96->203,453->517|1am2A|3e-15|24.0|158/181|b.86.1.2| RP:SCP:REP 301->389|1dfaA3|3e-10|15.7|89/117|d.95.2.2| RP:SCP:REP 518->648|1g18A1|7e-20|67.2|128/250|c.37.1.11| RP:SCP:REP 650->760|1dq3A1|8e-18|17.6|108/168|b.86.1.2| RP:SCP:REP 747->811|1r7mA1|4e-08|22.6|62/118|d.95.2.1| RP:SCP:REP 854->944|1r7mA2|8e-21|21.6|88/105|d.95.2.1| RP:SCP:REP 985->1070|1g18A1|9e-17|62.8|83/250|c.37.1.11| RP:SCP:REP 1071->1130|1g18A2|9e-20|75.0|60/60|d.48.1.1| HM:SCP:REP 26->95|1ubeA1|8.8e-18|41.4|70/0|c.37.1.11|1/3|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 95->517|1am2A_|5.4e-43|35.6|194/199|b.86.1.2|1/2|Hedgehog/intein (Hint) domain| HM:SCP:REP 518->709|1g19A1|5.8e-31|27.6|185/0|c.37.1.11|2/3|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 649->1006|1am2A_|6e-31|36.1|183/199|b.86.1.2|2/2|Hedgehog/intein (Hint) domain| HM:SCP:REP 1000->1070|1ubeA1|3.7e-12|25.4|71/0|c.37.1.11|3/3|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 1071->1130|1ubeA2|5.6e-22|61.7|60/0|d.48.1.1|1/1|RecA protein, C-terminal domain| OP:NHOMO 970 OP:NHOMOORG 911 OP:PATTERN --------------------------------------------------------1-1--------- 1121111111111111111-12221111111122121111111311111111111111111111111111111111111111111111111111111--111111111111111111111111111111111111111111111117111111111111111111111111111111111111321221111111-122112112211211111121121111111111111111111111111111111111111122111111111221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222232111111111111111111111111111111111111111111111111111111111111111111------11111111111111111-11-11111111111111111111111111111111111111111111111111111111111111--11111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111--11111111111111-1111--211-11111111111111111111111111111111 ----1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-31-1---336-4----211- ----------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------- DISOP:02AL 1-31, 456-463, 605-606, 1132-1177| PSIPRED cccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHccccEEEEEEEccccEEEEcccccEEcccEEEEEEcccccEEEEEEEEEcccEEEEEEEEcccEEEEEEcccEEEEEEccccEEEEEHHccccccEEEEEccccccccccccccHHHHHHHHHHHcccEEEccccEEEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEcHHHHHHHHHHHcccccccccccHHHHHccHHHHHHHHHHHHHcccEEccccEEEEEEccHHHHHHHHHHHHHccEEEEEEEEcccccEEEEEEEEcHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEEcccEEEEEccEEEccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHccccHHcEEEccccHHHHHHHHHHHHHccccEEEEEEcHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEccEEEEccccccEEEEccccEEEHHHHHcccccEEEEEEcccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEcccEEEcccccEEccccccccEEEcccccccccccEEEEEEEEEccEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEEEEcHHHHHHEEEEEEEcccEEEccHHHHHccccHHHHccccccccEEEEEccccccccEEEEEEHHHHHHHHHHHHHHHHHHccccEEHcccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccEEEccccccccccccccccEEEEEcHHcccEEEEEEEEEEEEEEccEEEccccccccccccccEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHcccEEEccEEEccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc //