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Thermobifida fusca YX (tfus0)
Gene : AAZ54872.1
DDBJ      :             transcriptional regulator, LacI family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  565/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.93.1
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->305 1zvvA PDBj 3e-36 32.1 %
:RPS:PDB   4->331 1efaB PDBj 3e-52 27.2 %
:RPS:SCOP  6->56 1bdhA1  a.35.1.5 * 1e-10 38.0 %
:RPS:SCOP  61->331 1rzrA2  c.93.1.1 * 1e-51 26.7 %
:HMM:SCOP  2->60 1efaA1 a.35.1.5 * 5.2e-12 44.1 %
:HMM:SCOP  59->341 1dbqA_ c.93.1.1 * 5.8e-77 39.4 %
:RPS:PFM   6->47 PF00356 * LacI 6e-08 64.3 %
:RPS:PFM   61->293 PF00532 * Peripla_BP_1 4e-28 37.3 %
:HMM:PFM   61->276 PF00532 * Peripla_BP_1 2.6e-23 29.0 207/279  
:HMM:PFM   6->48 PF00356 * LacI 7.3e-17 62.8 43/46  
:BLT:SWISS 4->331 YAML_STRLM e-112 62.8 %
:PROS 6->24|PS00356|HTH_LACI_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54872.1 GT:GENE AAZ54872.1 GT:PRODUCT transcriptional regulator, LacI family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 989003..990046 GB:FROM 989003 GB:TO 990046 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LacI family GB:PROTEIN_ID AAZ54872.1 GB:DB_XREF GI:71914970 InterPro:IPR000843 LENGTH 347 SQ:AASEQ MGPPRLADIARHAGVSEATVSRVLNDKPGVGPATREAVLTALDVLGYERPARLRQRSAGLVGMVVPELENPIFPMFAQAAERVLAQHGYTPVLCTQTPGGIVEDEYVEMLLERNVSGIIFVSGLHADTTANHDRYRALLQRRLPIVLVNGYVEGLPATFISPDDRAAARLAVNHLAALGHTRIGFASGPHRYVPVQRKLDGFKAAMLENGLDFHDDLVELSLFGVEGGHAAASRLLDRGVTAIVCGSDLMALGAIRAARQRNLTVPGDLSVVGYDDSPLIAFTDPPLTTVRQPIQAMALAAVRALCDEISGHAPARTEYMFEPELVVRGSTGVHRASLGEQVAPAGN GT:EXON 1|1-347:0| BL:SWS:NREP 1 BL:SWS:REP 4->331|YAML_STRLM|e-112|62.8|328/351| PROS 6->24|PS00356|HTH_LACI_1|PDOC00366| SEG 166->178|aaarlavnhlaal| BL:PDB:NREP 1 BL:PDB:REP 8->305|1zvvA|3e-36|32.1|293/332| RP:PDB:NREP 1 RP:PDB:REP 4->331|1efaB|3e-52|27.2|320/330| RP:PFM:NREP 2 RP:PFM:REP 6->47|PF00356|6e-08|64.3|42/46|LacI| RP:PFM:REP 61->293|PF00532|4e-28|37.3|228/261|Peripla_BP_1| HM:PFM:NREP 2 HM:PFM:REP 61->276|PF00532|2.6e-23|29.0|207/279|Peripla_BP_1| HM:PFM:REP 6->48|PF00356|7.3e-17|62.8|43/46|LacI| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00356|IPR000843| GO:PFM GO:0005622|"GO:intracellular"|PF00356|IPR000843| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00356|IPR000843| RP:SCP:NREP 2 RP:SCP:REP 6->56|1bdhA1|1e-10|38.0|50/56|a.35.1.5| RP:SCP:REP 61->331|1rzrA2|1e-51|26.7|266/272|c.93.1.1| HM:SCP:REP 2->60|1efaA1|5.2e-12|44.1|59/59|a.35.1.5|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 59->341|1dbqA_|5.8e-77|39.4|279/282|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 4077 OP:NHOMOORG 568 OP:PATTERN -------------------------------------------------------------------- 8793o12477B1-1-11----1---C------311124CH6-2AGVQ1HEB3QQP--4--8675R5MOTH6B7779DD3---4-----1111-1-----1-5-319-749--------------------------78865---A----------------------1-1-------------55122DC-D799998976A6988667EEEEAA79769F28577888773R5222222222222223115495618829112786666534786445555554543344444344444332322333333345522255559418D222222282855114667E4431228--------H1-4899A1-21-1ECC3-----2-543--------5545455545A---2--3125D--OFGBRLNWYRNM649157C74534655--------24411--1------------------------------37251255249BCCB97433355BG656548A993454--6669-31143715D----1--2----------------1----11-3------------------G-----------------------------ABC5-77-8475454633222312233115-------------JGGE6IBCCCDCDCDCB-CC9CECBCDDCDCEEADECKOJGG776CFBBCDCCCCBBCBABNAAABBBD3-EDDEDDDCDEDD---------------66A333436133333334----------6733332347133341555----------878699999B97DD87AAAAA8881111---1----------------5-------------------------558614A655-1- -------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 99.4 SQ:SECSTR TTcccHHHHHHTTTccHHHHHHHHTTcccccTHHHHHHHHHHHHTTccccHHHTTccccEEEEEEEcTTcHHHHHHHHHHHHHHHHTTcEEEEEEEccccHHHHHHHHHHHHTTccEEEEEcccccHcccHHHHHHHHHHcccccEEEccccTTccccEEEEcHHHHHHHHHHHHHHTTcccEEEEEccTTcHHHHHHHHHHHHHHHTTTccccGcEEEEccccHHHHHHHHHHHHHTTccEEEEccHHHHHHHHHHHHTTTcccTTTcEEEEEEccTGGGGcccccEEEEccHHHHHHHHHHHHHHHHTTcccccEEEEEccEEEcccTTcccTTcTTcHHHHH## DISOP:02AL 52-54, 329-347| PSIPRED cccccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHccccEEEEccccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccccccccccccccccc //