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Thermobifida fusca YX (tfus0)
Gene : AAZ54889.1
DDBJ      :             putative membrane protein
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  186/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.111.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   172->284 1cfeA PDBj 9e-15 16.8 %
:RPS:SCOP  172->284 1cfeA  d.111.1.1 * 4e-15 16.8 %
:HMM:SCOP  164->285 1smbA_ d.111.1.1 * 2.7e-21 36.4 %
:RPS:PFM   176->272 PF00188 * CAP 3e-11 38.9 %
:HMM:PFM   175->275 PF00188 * CAP 3.9e-20 30.7 101/124  
:HMM:PFM   81->135 PF05308 * DUF729 0.00038 25.5 55/253  
:HMM:PFM   27->58 PF03186 * CobD_Cbib 0.00048 31.0 29/292  
:BLT:SWISS 173->272 Y689_BORBU 2e-04 23.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54889.1 GT:GENE AAZ54889.1 GT:PRODUCT putative membrane protein GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1005967..1006830) GB:FROM 1005967 GB:TO 1006830 GB:DIRECTION - GB:PRODUCT putative membrane protein GB:PROTEIN_ID AAZ54889.1 GB:DB_XREF GI:71914987 LENGTH 287 SQ:AASEQ MSEDEQSPLGSRSHRRRPPPSRRRRRRPPLRRRRISGTLLTALLALPVGLVLAAVLVFGSMRMPSSDPSSYAPGSLLPNDAAVPTPFFPSAEAEAAPPIPSPSPPPNVQAEQRRDGVKTQAEEQNSAEEEASSGSSTGSGGQSGSGGGGSGSSSAPSSRSGSTGSMNALSAQVFALVNEERAAAGCPPVRADDRLTAAAQAHSEDMDRNNYMSHTSLDGRTPDDRAREHGYHAWSGENIAKGQRTAAQVMRDWMNSPGHRRNILNCSNRALGVGESNGAWTQMFGRE GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 173->272|Y689_BORBU|2e-04|23.2|99/100| TM:NTM 1 TM:REGION 38->60| SEG 7->34|splgsrshrrrpppsrrrrrrpplrrrr| SEG 37->57|gtlltallalpvglvlaavlv| SEG 84->106|ptpffpsaeaeaappipspsppp| SEG 120->165|qaeeqnsaeeeassgsstgsggqsgsggggsgsssapssrsgstgs| RP:PDB:NREP 1 RP:PDB:REP 172->284|1cfeA|9e-15|16.8|113/135| RP:PFM:NREP 1 RP:PFM:REP 176->272|PF00188|3e-11|38.9|95/122|CAP| HM:PFM:NREP 3 HM:PFM:REP 175->275|PF00188|3.9e-20|30.7|101/124|CAP| HM:PFM:REP 81->135|PF05308|0.00038|25.5|55/253|DUF729| HM:PFM:REP 27->58|PF03186|0.00048|31.0|29/292|CobD_Cbib| RP:SCP:NREP 1 RP:SCP:REP 172->284|1cfeA|4e-15|16.8|113/135|d.111.1.1| HM:SCP:REP 164->285|1smbA_|2.7e-21|36.4|110/149|d.111.1.1|1/1|PR-1-like| OP:NHOMO 365 OP:NHOMOORG 197 OP:PATTERN --------------------------------------11111-----------------------1- 111-1----------11----1---------------1---2331---------------22--4121331-----------2-----------------1-----------------------------------11123---3-31----------------21-11--------------224------22222222222222222232222222-21331111111142-111111-111111-11111----------------------------------------------------------------------1421422222221211211-111213--2--1111223-1--1-111--1------2--------------------------------------1-------1----------1--3-1111112-----------------------------------------------------------------------------------------1-----------------------------1--1---------------1-----------121---------------------------------11--------------------------1-----------------------------------------------------------------------------------------------------------4-----------------111111----1-11111111111111222-------------1------1--------------------111----------------------------------------------------- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEFN- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 113 STR:RPRED 39.4 SQ:SECSTR ###########################################################################################################################################################################HHHHHHHHHHHHTTccccEEccHHHHHHHHHHHHHTTTccccccccccccEEccccccHHHHHHHHHTTGGGEEGGGTEEccccccccHHHHHcTTccEEEEEEEEcTTccEE### DISOP:02AL 1-31, 58-167| PSIPRED ccccccccccccHHcccccccHHHHcccccEEcccccHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEEEcccccHHHHHHHHcccHHHHHHHccccccEEEEEEEccEEEEEEEcc //