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Thermobifida fusca YX (tfus0)
Gene : AAZ54890.1
DDBJ      :             Recombination protein O, RecO
Swiss-Prot:RECO_THEFY   RecName: Full=DNA repair protein recO;AltName: Full=Recombination protein O;

Homologs  Archaea  0/68 : Bacteria  191/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.40.4g.45.1
:243 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->193 1w3sB PDBj 2e-11 30.8 %
:RPS:SCOP  1->79 1u5kA1  b.40.4.13 * 8e-19 30.3 %
:RPS:SCOP  83->240 1u5kA2  g.45.1.2 * 2e-14 21.3 %
:HMM:SCOP  1->79 1u5kA1 b.40.4.13 * 5.4e-23 47.4 %
:HMM:SCOP  82->233 1u5kA2 g.45.1.2 * 1.5e-40 37.6 %
:RPS:PFM   3->76 PF11967 * RecO_N 5e-15 45.9 %
:RPS:PFM   107->236 PF02565 * RecO_C 2e-07 36.7 %
:HMM:PFM   1->79 PF11967 * RecO_N 3.2e-29 41.8 79/80  
:HMM:PFM   85->237 PF02565 * RecO_C 1.6e-20 31.0 113/118  
:BLT:SWISS 1->243 RECO_THEFY e-139 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54890.1 GT:GENE AAZ54890.1 GT:PRODUCT Recombination protein O, RecO GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1007016..1007747 GB:FROM 1007016 GB:TO 1007747 GB:DIRECTION + GB:PRODUCT Recombination protein O, RecO GB:PROTEIN_ID AAZ54890.1 GB:DB_XREF GI:71914988 InterPro:IPR003717 LENGTH 243 SQ:AASEQ MSLYRDEGIVLRTQDLGEADRIVTLLTRRTGLVRAVGKGVRRTRSRFGARLEPFTHIDVQLHAGKSLDVVTQVDTLHAYGSVLVTDYPRYTAGVAMLETAEKVVSVEKDPALRQFLLLWGGLRTLAEGAHDPRLVLDAYLLRSLAVAGYAPALEECAHCGVPGPHREFAVHAGGMVCSLCRPAGSVKPSPAAVALMVALLRGDWESADASAERDRTECSGLVAAYLQWHLENGVRSLRLVERA GT:EXON 1|1-243:0| SW:ID RECO_THEFY SW:DE RecName: Full=DNA repair protein recO;AltName: Full=Recombination protein O; SW:GN Name=recO; OrderedLocusNames=Tfu_0852; SW:KW Complete proteome; DNA damage; DNA recombination; DNA repair. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->243|RECO_THEFY|e-139|100.0|243/243| GO:SWS:NREP 3 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| BL:PDB:NREP 1 BL:PDB:REP 8->193|1w3sB|2e-11|30.8|172/231| RP:PFM:NREP 2 RP:PFM:REP 3->76|PF11967|5e-15|45.9|74/78|RecO_N| RP:PFM:REP 107->236|PF02565|2e-07|36.7|128/156|RecO_C| HM:PFM:NREP 2 HM:PFM:REP 1->79|PF11967|3.2e-29|41.8|79/80|RecO_N| HM:PFM:REP 85->237|PF02565|1.6e-20|31.0|113/118|RecO_C| GO:PFM:NREP 2 GO:PFM GO:0006281|"GO:DNA repair"|PF02565|IPR003717| GO:PFM GO:0006310|"GO:DNA recombination"|PF02565|IPR003717| RP:SCP:NREP 2 RP:SCP:REP 1->79|1u5kA1|8e-19|30.3|76/78|b.40.4.13| RP:SCP:REP 83->240|1u5kA2|2e-14|21.3|155/157|g.45.1.2| HM:SCP:REP 1->79|1u5kA1|5.4e-23|47.4|76/0|b.40.4.13|1/1|Nucleic acid-binding proteins| HM:SCP:REP 82->233|1u5kA2|1.5e-40|37.6|149/0|g.45.1.2|1/1|ArfGap/RecO-like zinc finger| OP:NHOMO 191 OP:NHOMOORG 191 OP:PATTERN -------------------------------------------------------------------- -1--111111111111111-11111111111111111111111111111111111111111111111111111111111-111-------------------------1---------------------------111111111111111111111------1--11111---1-----1--111------11111111111111111-11111111111111111111111-------------------------------------------------------------------------------------------11-1-1--------11--1---1-1--1-11111111111111111---1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-1111-----1-11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 179 STR:RPRED 73.7 SQ:SECSTR #######EEEEEEEEcccccEEEEEEETT#EEEEEEEccc#cTTcTccTTccTTcEEEEEEEcccccccEEEEEEEEEEccGGGGcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc#cHHHHHHHHHHHHHHHTTccccccccTTTccccccEEcTT#TccEEcTTT###cccccccHHH################################################## DISOP:02AL 211-212| PSIPRED cccEEEEEEEEEEcccccccEEEEEEcccccEEEEEEEcccccccccHHHHcccEEEEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccEEEccccccccccccHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHcc //