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Thermobifida fusca YX (tfus0)
Gene : AAZ54904.1
DDBJ      :             DNA primase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  903/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
e.13.1g.41.3
:656 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->430 2au3A PDBj 7e-40 30.9 %
:RPS:PDB   39->138 1d0qA PDBj 8e-30 46.5 %
:RPS:PDB   153->469 1ddeA PDBj 4e-67 31.7 %
:RPS:SCOP  39->138 1d0qA  g.41.3.2 * 1e-30 46.5 %
:RPS:SCOP  153->469 1dd9A  e.13.1.1 * 1e-28 31.1 %
:HMM:SCOP  38->140 1d0qA_ g.41.3.2 * 4.6e-35 51.0 %
:HMM:SCOP  152->470 1dd9A_ e.13.1.1 * 8.6e-96 46.8 %
:RPS:PFM   39->134 PF01807 * zf-CHC2 6e-25 54.9 %
:RPS:PFM   163->289 PF08275 * Toprim_N 3e-36 53.2 %
:RPS:PFM   410->466 PF10410 * DnaB_bind 2e-07 42.1 %
:RPS:PFM   509->621 PF08278 * DnaG_DnaB_bind 2e-04 32.4 %
:HMM:PFM   163->290 PF08275 * Toprim_N 3.9e-40 48.0 127/128  
:HMM:PFM   42->138 PF01807 * zf-CHC2 6.2e-35 52.1 96/98  
:HMM:PFM   410->467 PF10410 * DnaB_bind 2.8e-17 44.8 58/59  
:HMM:PFM   298->379 PF01751 * Toprim 3.6e-11 28.2 78/96  
:HMM:PFM   508->633 PF08278 * DnaG_DnaB_bind 1.3e-09 24.2 120/127  
:BLT:SWISS 37->656 PRIM_STRCO e-162 51.1 %
:PROS 447->463|PS00237|G_PROTEIN_RECEP_F1_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54904.1 GT:GENE AAZ54904.1 GT:PRODUCT DNA primase GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1021393..1023363 GB:FROM 1021393 GB:TO 1023363 GB:DIRECTION + GB:PRODUCT DNA primase GB:PROTEIN_ID AAZ54904.1 GB:DB_XREF GI:71915002 InterPro:IPR000276 InterPro:IPR002694 InterPro:IPR006154 InterPro:IPR006295 InterPro:IPR006647 LENGTH 656 SQ:AASEQ MPEAATVGGSPAWPAPTAGLPPPSHPSPAATNTLASVSGRIKDEDVALVRERSPIADVVGEYLQLRNAGGGSLKGLCPFHDEKTPSFNVTPARNLWYCFGCGEGGDVISFIQKIEHLSFVEAVEHLARAAGIQLRYEQGGYVPRNEQGQRQRLVDAHRVAAEFYAEQLLSPEAQAGRRFLVERGFTRADAEHFGVGYAPASWNALLSHLRAKGFTDQEIVLAGLASQGRRGPYDRFRGRLVWPVRDLSGDVVGFGARKLDPEDTGPKYLNTPETPLFKKSSLLYGLDLAKKEIARQRQAVIVEGYTDVMACHLAGVTTAVATCGTSFGEEHLKILRRLLLGRFEFGGEVIFTFDGDQAGRNAALRAFAEEHGFASETFVAVQPDGLDPCDLRVQRGDAAVRDLIAAKQPLYEFMIRSKFEGYNLDTPEGRLAALDAAAPIVASIRNAGVRRLYGVSLDRWLGIMDEEFVHRRIQEHMRRARGRRVPPKPATAAPAPRYDLRDPVVQRERLALKLAVQHPLLCSGFDHLDADMFTVEQHRDVFHLIQKAGGTQSVQDPALWAGQLRETARNEAQRTFLTQLAVEPIEIYGELDEYRAQEIISTIRIHSINRQITNLKSRLSRLDPVADAEEYQRIFTELMTAEQQKRMMRERFGGAM GT:EXON 1|1-656:0| BL:SWS:NREP 1 BL:SWS:REP 37->656|PRIM_STRCO|e-162|51.1|618/641| PROS 447->463|PS00237|G_PROTEIN_RECEP_F1_1|PDOC00210| SEG 314->325|agvttavatcgt| SEG 335->348|lrrlllgrfefgge| SEG 431->438|laaldaaa| SEG 486->496|ppkpataapap| BL:PDB:NREP 1 BL:PDB:REP 45->430|2au3A|7e-40|30.9|366/403| RP:PDB:NREP 2 RP:PDB:REP 39->138|1d0qA|8e-30|46.5|99/102| RP:PDB:REP 153->469|1ddeA|4e-67|31.7|306/310| RP:PFM:NREP 4 RP:PFM:REP 39->134|PF01807|6e-25|54.9|91/95|zf-CHC2| RP:PFM:REP 163->289|PF08275|3e-36|53.2|126/129|Toprim_N| RP:PFM:REP 410->466|PF10410|2e-07|42.1|57/59|DnaB_bind| RP:PFM:REP 509->621|PF08278|2e-04|32.4|108/125|DnaG_DnaB_bind| HM:PFM:NREP 5 HM:PFM:REP 163->290|PF08275|3.9e-40|48.0|127/128|Toprim_N| HM:PFM:REP 42->138|PF01807|6.2e-35|52.1|96/98|zf-CHC2| HM:PFM:REP 410->467|PF10410|2.8e-17|44.8|58/59|DnaB_bind| HM:PFM:REP 298->379|PF01751|3.6e-11|28.2|78/96|Toprim| HM:PFM:REP 508->633|PF08278|1.3e-09|24.2|120/127|DnaG_DnaB_bind| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF01807|IPR002694| GO:PFM GO:0003896|"GO:DNA primase activity"|PF01807|IPR002694| GO:PFM GO:0006260|"GO:DNA replication"|PF01807|IPR002694| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01807|IPR002694| GO:PFM GO:0003896|"GO:DNA primase activity"|PF08278|IPR013173| GO:PFM GO:0006269|"GO:DNA replication, synthesis of RNA primer"|PF08278|IPR013173| RP:SCP:NREP 2 RP:SCP:REP 39->138|1d0qA|1e-30|46.5|99/102|g.41.3.2| RP:SCP:REP 153->469|1dd9A|1e-28|31.1|305/310|e.13.1.1| HM:SCP:REP 38->140|1d0qA_|4.6e-35|51.0|102/0|g.41.3.2|1/1|Zinc beta-ribbon| HM:SCP:REP 152->470|1dd9A_|8.6e-96|46.8|310/314|e.13.1.1|1/1|DNA primase core| OP:NHOMO 969 OP:NHOMOORG 907 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111112111111111411111111151111111111111111111111111111212211--1112111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111-111121211111111111111111111111121111111111111111111121111111111111111111111111111111112111112111111111111111111111-113111111111111111121111111111111111111111111111111111111111111111111222111111111111111112111111111111111111-211111111111111111111111111-1111-11111111331111111111111-1111111111111111111111719B1111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-1111111111111111111321211111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------1----------------11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 430 STR:RPRED 65.5 SQ:SECSTR ######################################TTccHcHHHHHHHHccHHHHHHHHcccEEETTEEEEEcccccccccccEEEETTTTEEEETTTccEEcHHHHHHHHHTccHHHHHHHHHHHHTccccTTc###ccHHHccHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHTTccHHHHHHTTcEEEcccccHHHHHHcccHHHHHHHHHTTcEEEccEccEEccccEEEEEEEcTTccEEEEEEEEcccccccccEEEccccTTccGGGcccTHHHHHHHccccccEEEEccHHHHHHHHHTTcccEEEcccccccHHHHHHcHHHHHHHHHHccEEEEEEEEcHHHHHHHHHHHHHHGGGccEEEEEEEEETccHHHHHHHHHHHHHHHHHHTcEEHHHHHHHHHGGGccTTcHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTcccGGGcTc######################################################################################################################################################################################### DISOP:02AL 1-5, 134-153, 470-505, 615-631, 654-656| PSIPRED ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHccccccccccEEEEccccccccccEEEEccccEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHccccccHHHHHHHcccEEcccccEEEEEcEEEEEEEcccccEEEEEccEEccccccccEEcccccccccccHHHccHHHHHHHHccccEEEEEEcHHHHHHHHHcccccEEEEccccccHHHHHHHHHHccHHHccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc //