[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ54948.1
DDBJ      :             ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  517/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:572 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->566 1vr5A PDBj e-126 45.6 %
:RPS:PDB   36->550 3drgA PDBj 7e-69 16.4 %
:RPS:SCOP  48->567 1vr5A1  c.94.1.1 * 9e-84 42.4 %
:HMM:SCOP  34->551 1vr5A1 c.94.1.1 * 1.3e-111 33.5 %
:RPS:PFM   85->442 PF00496 * SBP_bac_5 6e-34 39.3 %
:HMM:PFM   83->458 PF00496 * SBP_bac_5 7.1e-73 34.0 353/372  
:BLT:SWISS 49->521 APPA_BACSU 1e-28 29.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ54948.1 GT:GENE AAZ54948.1 GT:PRODUCT ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1071235..1072953 GB:FROM 1071235 GB:TO 1072953 GB:DIRECTION + GB:PRODUCT ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components GB:PROTEIN_ID AAZ54948.1 GB:DB_XREF GI:71915046 LENGTH 572 SQ:AASEQ MRNRYRFLIPLALVSLLATSCGGDTEGDGGATGDYPRAETLYTGGTQWGPPSTWNPLDTGNYATGTVGLVYETLFLYEPQTGEYIPWLAESGEWVDDKTYELKLRQGVKWSDGEDFTADDVVFTVEIGKYEGSSYHSLWEWLESAEAVDDYTVKFTFSKANYAQWANWLYFNAIVPEHIWSERSEEEILTGANEDPVGTGPYLYETHDQDRQVWKKNEDWWATEALGHEVKPTYIVDVVNTSNEAALSQVLQGNIDINNNFLPGIAQLVQGGYQVQTYFPEEPYMLAANTAWLVPNTTKKPMDDPEFRKALSASIDMDEIVNNVYGGLVTEADPTGLLPVWDDYIDTEVVEKHATPRDPKVAKKILEEAGYEDTDNDGFVETPDGEPIDLTLIVPSGWTDWMEAARVISESASEVGIKVTTDFPEFNALVDQRNSGEFDLVINNERQISNTPWTYYDYIFRLPVQDQQTTVNFGRYENEEAWELVGELDGIPVEDTEKIREVAGKIQKIQLEEMPVIPLWYNGLWAQYNNSVWTNWPSSESDNNYLPSTWRGYFQLGSILMLTELEPASEEE GT:EXON 1|1-572:0| BL:SWS:NREP 1 BL:SWS:REP 49->521|APPA_BACSU|1e-28|29.4|445/543| SEG 22->34|ggdtegdggatgd| BL:PDB:NREP 1 BL:PDB:REP 35->566|1vr5A|e-126|45.6|520/527| RP:PDB:NREP 1 RP:PDB:REP 36->550|3drgA|7e-69|16.4|500/562| RP:PFM:NREP 1 RP:PFM:REP 85->442|PF00496|6e-34|39.3|328/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 83->458|PF00496|7.1e-73|34.0|353/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 48->567|1vr5A1|9e-84|42.4|514/535|c.94.1.1| HM:SCP:REP 34->551|1vr5A1|1.3e-111|33.5|511/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1843 OP:NHOMOORG 554 OP:PATTERN --212---11221-1-1--1---111131221-2---------1-3-43-JB6-43321-211-1--- -1-13122333-1------------5------1---2513-21327521111234--2--11--613-2622---4--122-21-111-------------------------------------1--------2--4441111561221222----------21--3242------------5312166-511444442342324233B933414332-377--111111H6-222122122222221----2------------------------1---1------------------------------1----1-----A3123331333-311322-111111329--1-55721--91-2451163-1----------1178I111223514466467566B-1-7--513GG1-VHHGAB7IGDKGB3---3456366486------------11-3-----------------------------------7665A4555542222244432222233374345--225-11223-714D11---1-21-------------124-121421311211111111------1411111--11111-11111111111-11--54112--1-14-11111-111111111121-----1-------43992643334343433-3333444343343333333444874342212222222222222722244432-344444444444---1----------1225554-111111-3--2------1-115-55553446444243888----------34355555567566-----------------5111111222-2---3---------------------------21322BB9771-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 533 STR:RPRED 93.2 SQ:SECSTR ##################################cccccEEEEEcEEEccccccccccTTTcccHHHGTTTTcccEEcTTTccEEccccEEEEEETTTEEEEEEcTTcccTTcccccHHHHHHHcTTHHHHHHTcccccTTEEcTTcTTccEEEEEcccccGGGGcTcccccccccHHHHTTccGGGTTTcTTTcccccccEEEEEEETTTEEEEEcTTcccccccccEEEEEEEEEEEcccGGGHHHHHHTTcccEEEcccGGGHHHHTTcTTEEEEEEEEcccEEETTTTEEEcccccGGGcHHHHHHHHHHccHHHHHHHHcTTcEEEcccccccTTcGGGccTTcTccccccccHHHHHHHHHTTTcEEcTTTccEEEETTEEcEEEEEcccccTTHHHHHHHHHHHHHHTTcEEEEGGGccccHHHHHHHHHcccccccccEHEEEEEEcccccccHHHHcTTcTTcTTccccHHHHHHHHHHTccGGGcHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEEETTEHEcEEccTTcccHHHHcETGGccGTGGGHHHHcEE##### DISOP:02AL 1-2, 24-38, 569-572| PSIPRED ccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHEEEcccccEEcccEEEEEEEccccEEEEEEccccEEcccccccHHHHHHHHHHHccccccHHHHHHHHcEEEEEccEEEEEEEccccHHHHHHHHHHHHcccHHHHHccccccccccccccccccccEEEEEEEccEEEEEEcccccccccccccEEEEEEEEEEEccHHHHHHHHHcccEEEEEcccHHHHHHHHccccEEEEEEcccEEcccEEEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHccccEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccEEEccccccccccccccccccccHHHHHHHHcccccccccc //